RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 DRGXA6NNA5 263 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 CACNG3O60359 315 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 AVILO75366 819 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 MT-ND3P03897 115 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 SNRPAP09012 282 aaKnown RBP12.89□□□□□ -0.35
SHMT2-229ENST00000557348 ATF6P18850 670 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 GNAZP19086 355 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 GEMP55040 296 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 YBEYP58557 167 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-229ENST00000557348 WDR5P61964 334 aaKnown RBP12.89□□□□□ -0.35
SHMT2-229ENST00000557348 CDH17Q12864 832 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 RAB33AQ14088 237 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 SPARCL1Q14515 664 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 PARP15Q460N3 678 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 PIK3R6Q5UE93 754 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 KCTD11Q693B1 232 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 CWF19L1Q69YN2 538 aaKnown RBP12.89□□□□□ -0.35
SHMT2-229ENST00000557348 IRGCQ6NXR0 463 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 CASC4Q6P4E1 433 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 RSPO2Q6UXX9 243 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-229ENST00000557348 TAS1R1Q7RTX1 841 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 IGDCC3Q8IVU1 814 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 ARHGAP12Q8IWW6 846 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 CCDC33Q8N5R6 958 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 MDM1Q8TC05 714 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 DPF3Q92784 378 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 PLD4Q96BZ4 506 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 FCRL5Q96RD9 977 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 IL12RB2Q99665 862 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 DDX50Q9BQ39 737 aaKnown RBP12.89□□□□□ -0.35
SHMT2-229ENST00000557348 IL22Q9GZX6 179 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 CASS4Q9NQ75 786 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 TRPM5Q9NZQ8 1165 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 HCSTQ9UBK5 93 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 STARD13Q9Y3M8 1113 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 LTBP2Q14767 1821 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 SLC12A8A0AV02 714 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 ZBTB24O43167 697 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-229ENST00000557348 MAFKO60675 156 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 NFKB1P19838 968 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 PBX3P40426 434 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 SLC11A2P49281 568 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 HARS2P49590 506 aaKnown RBP12.89□□□□□ -0.35
SHMT2-229ENST00000557348 RENBPP51606 427 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 KLC1Q07866 573 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 HNRNPDQ14103 355 aaKnown RBP12.89□□□□□ -0.35
SHMT2-229ENST00000557348 SEPT7Q16181 437 aaKnown RBP12.89□□□□□ -0.35
SHMT2-229ENST00000557348 SLC5A9Q2M3M2 681 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 FAM133BQ5BKY9 247 aaKnown RBP12.89□□□□□ -0.35
SHMT2-229ENST00000557348 HECTD3Q5T447 861 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 EP400NLQ6ZTU2 488 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 ITIH5Q86UX2 942 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 CTAGE3PQ8IX95 158 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 ZNF683Q8IZ20 524 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 DIS3LQ8TF46 1054 aaKnown RBP12.89□□□□□ -0.35
SHMT2-229ENST00000557348 PTCD2Q8WV60 388 aaKnown RBP12.89□□□□□ -0.35
SHMT2-229ENST00000557348 PAWRQ96IZ0 340 aaKnown RBP12.89□□□□□ -0.35
SHMT2-229ENST00000557348 ZNF512Q96ME7 567 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-229ENST00000557348 TMEM106CQ9BVX2 250 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 NACA2Q9H009 215 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 CRISPLD1Q9H336 500 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 KIF9Q9HAQ2 790 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 SLC24A3Q9HC58 644 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 ABCF3Q9NUQ8 709 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 MOCS1Q9NZB8 636 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 VANGL2Q9ULK5 521 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 PCDHB12Q9Y5F1 795 aa12.89□□□□□ -0.35
SHMT2-229ENST00000557348 F5H5T6 163 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 JCHAINP01591 159 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 CA4P22748 312 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 PGFP49763 221 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 TNK2Q07912 1038 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 ZBTB17Q13105 803 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 BIRC2Q13490 618 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 LRRC26Q2I0M4 334 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 C5orf22Q49AR2 442 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 RABGAP1LQ5R372 815 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 SYCP2LQ5T4T6 812 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 RASIP1Q5U651 963 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 MARK2Q7KZI7 788 aaKnown RBP12.88□□□□□ -0.35
SHMT2-229ENST00000557348 MIB1Q86YT6 1006 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 TCEAL8Q8IYN2 117 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 PPM1NQ8N819 430 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 ANKRD42Q8N9B4 389 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 DNAAF3Q8N9W5 541 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 DEPDC1BQ8WUY9 529 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 CELF6Q96J87 481 aaKnown RBP12.88□□□□□ -0.35
SHMT2-229ENST00000557348 AGAP3Q96P47 875 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 CLSTN3Q9BQT9 956 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 OSBPL1AQ9BXW6 950 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 SLC39A8Q9C0K1 460 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 DCLRE1BQ9H816 532 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 ENTPD7Q9NQZ7 604 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 SAR1AQ9NR31 198 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 PAPOLBQ9NRJ5 636 aaKnown RBP12.88□□□□□ -0.35
SHMT2-229ENST00000557348 MRPL17Q9NRX2 175 aaKnown RBP12.88□□□□□ -0.35
SHMT2-229ENST00000557348 MKS1Q9NXB0 559 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 NSMCE4AQ9NXX6 385 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 STOML1Q9UBI4 398 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 MAGED2Q9UNF1 606 aaPredicted RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms