RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 TRPC1P48995 793 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 AFF1P51825 1210 aaKnown RBP12.49□□□□□ -0.41
SHMT2-207ENST00000553837 CRADDP78560 199 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 GPR162Q16538 588 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 MORN1Q5T089 497 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 SYPL2Q5VXT5 272 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 Q6ZNX1 250 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 DENND5BQ6ZUT9 1274 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 TMEM126BQ8IUX1 230 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 PQLC1Q8N2U9 271 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 B3GALNT2Q8NCR0 500 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 BHMTQ93088 406 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 CMTM5Q96DZ9 223 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 HSPBAP1Q96EW2 488 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 CEP41Q9BYV8 373 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 PLGRKTQ9HBL7 147 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 INIPQ9NRY2 104 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 THAP1Q9NVV9 213 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 COX16Q9P0S2 106 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 PSMD13Q9UNM6 376 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 CEPT1Q9Y6K0 416 aa12.49□□□□□ -0.41
SHMT2-207ENST00000553837 SH3PXD2BA1X283 911 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 CDH2P19022 906 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-207ENST00000553837 TPSB2P20231 275 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 SCNN1AP37088 669 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 HSPA13P48723 471 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 SULT1E1P49888 294 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 RAB15P59190 212 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 MYBPC1Q00872 1141 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 CREB5Q02930 508 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 APOFQ13790 326 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 TPSAB1Q15661 275 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 RARS2Q5T160 578 aaKnown RBP12.48□□□□□ -0.41
SHMT2-207ENST00000553837 WSCD1Q658N2 575 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 NANOGNBQ7Z5D8 188 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 CTU1Q7Z7A3 348 aaKnown RBP12.48□□□□□ -0.41
SHMT2-207ENST00000553837 CCDC124Q96CT7 223 aaKnown RBP12.48□□□□□ -0.41
SHMT2-207ENST00000553837 HSFY1Q96LI6 401 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 BIRC8Q96P09 236 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 PARK7Q99497 189 aaKnown RBP12.48□□□□□ -0.41
SHMT2-207ENST00000553837 PRPF18Q99633 342 aaKnown RBP12.48□□□□□ -0.41
SHMT2-207ENST00000553837 EBNA1BP2Q99848 306 aaKnown RBP12.48□□□□□ -0.41
SHMT2-207ENST00000553837 EBF4Q9BQW3 602 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 HAUS8Q9BT25 410 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 ZNF395Q9H8N7 513 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-207ENST00000553837 ANLNQ9NQW6 1124 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 RSL24D1Q9UHA3 163 aaKnown RBP12.48□□□□□ -0.41
SHMT2-207ENST00000553837 SCN4AP35499 1836 aa12.48□□□□□ -0.41
SHMT2-207ENST00000553837 CCDC195A0A1B0GUA6 201 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 I6L893 689 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-207ENST00000553837 CYB561D2O14569 222 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 TRDMT1O14717 391 aaKnown RBP12.47□□□□□ -0.41
SHMT2-207ENST00000553837 XPO1O14980 1071 aaKnown RBP12.47□□□□□ -0.41
SHMT2-207ENST00000553837 CBFA2T3O75081 653 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 ALDH2P05091 517 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 MYL3P08590 195 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 FUT4P22083 530 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 AXLP30530 894 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 NR2C2P49116 596 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 SNX16P57768 344 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 CDC42EP1Q00587 391 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 SEMA5AQ13591 1074 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 INAQ16352 499 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 BCL2A1Q16548 175 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 SLC25A52Q3SY17 297 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 PDCD4Q53EL6 469 aaKnown RBP12.47□□□□□ -0.41
SHMT2-207ENST00000553837 DCAF6Q58WW2 860 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 PACS1Q6VY07 963 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 STRADAQ7RTN6 431 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 BNIPLQ7Z465 357 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 PATL1Q86TB9 770 aaKnown RBP12.47□□□□□ -0.41
SHMT2-207ENST00000553837 LSM14AQ8ND56 463 aaKnown RBP12.47□□□□□ -0.41
SHMT2-207ENST00000553837 HTR3CQ8WXA8 447 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 FAM149B1Q96BN6 582 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 CNBD2Q96M20 576 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 LRGUKQ96M69 825 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 ZNF560Q96MR9 790 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 PGLYRP2Q96PD5 576 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 KCNK16Q96T55 309 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 HNRNPABQ99729 332 aaKnown RBP12.47□□□□□ -0.41
SHMT2-207ENST00000553837 DUSP16Q9BY84 665 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 FRMD8Q9BZ67 464 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-207ENST00000553837 TMEM30AQ9NV96 361 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 MKS1Q9NXB0 559 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 ZNHIT2Q9UHR6 403 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 ZNF180Q9UJW8 692 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 APPL1Q9UKG1 709 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 AP4B1Q9Y6B7 739 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 MYO18AQ92614 2054 aaKnown RBP12.47□□□□□ -0.41
SHMT2-207ENST00000553837 FAM159BA6NKW6 160 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 NRP1O14786 923 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 HUS1O60921 280 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 FYNP06241 537 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 WARSP23381 471 aaKnown RBP12.47□□□□□ -0.41
SHMT2-207ENST00000553837 ACADSBP45954 432 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 PCBP1Q15365 356 aaKnown RBP eCLIP12.47□□□□□ -0.41
SHMT2-207ENST00000553837 HEATR6Q6AI08 1181 aaKnown RBP12.47□□□□□ -0.41
SHMT2-207ENST00000553837 IYDQ6PHW0 289 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 HPS6Q86YV9 775 aa12.47□□□□□ -0.41
SHMT2-207ENST00000553837 DEFB107AQ8IZN7 70 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms