RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 SLC35B2Q8TB61 432 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 CSGALNACT1Q8TDX6 532 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 ABHD5Q8WTS1 349 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 DNAAF4Q8WXU2 420 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 EXTL1Q92935 676 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 C12orf42Q96LP6 360 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 SLC46A1Q96NT5 459 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 TP63Q9H3D4 680 aaPredicted RBP4.11□□□□□ -1.75
LIMA1-208ENST00000551691 MROH8Q9H579 483 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 CHODLQ9H9P2 273 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 PRDM8Q9NQV8 689 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 PDGFCQ9NRA1 345 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 HESX1Q9UBX0 185 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 CTNNA3Q9UI47 895 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 BAG5Q9UL15 447 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 BARX2Q9UMQ3 279 aaPredicted RBP4.11□□□□□ -1.75
LIMA1-208ENST00000551691 TBX20Q9UMR3 447 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 SUFUQ9UMX1 484 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 C19orf53Q9UNZ5 99 aaPredicted RBP4.11□□□□□ -1.75
LIMA1-208ENST00000551691 ZFR2Q9UPR6 939 aaKnown RBP4.11□□□□□ -1.75
LIMA1-208ENST00000551691 CLCA2Q9UQC9 943 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 USP15Q9Y4E8 981 aaPredicted RBP4.11□□□□□ -1.75
LIMA1-208ENST00000551691 RIPK3Q9Y572 518 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 RAD54BQ9Y620 910 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 TENM4Q6N022 2769 aa4.11□□□□□ -1.75
LIMA1-208ENST00000551691 USP9XQ93008 2570 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-208ENST00000551691 CDK5RAP2Q96SN8 1893 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 B9A039 149 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 E7EVH7 732 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 J3KTA2 159 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 TOR1BO14657 336 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 PER2O15055 1255 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 RRP9O43818 475 aaKnown RBP4.1□□□□□ -1.75
LIMA1-208ENST00000551691 TSPAN3O60637 253 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 PPP6R2O75170 966 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 ERN1O75460 977 aaKnown RBP4.1□□□□□ -1.75
LIMA1-208ENST00000551691 PRKCBP05771 671 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 HNRNPA1P09651 372 aaKnown RBP eCLIP4.1□□□□□ -1.75
LIMA1-208ENST00000551691 CHRM3P20309 590 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 ITGALP20701 1170 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 RPS6KB1P23443 525 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 DNAJB1P25685 340 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 MST1P26927 711 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 SERPINA4P29622 427 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 KRT20P35900 424 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 PGM1P36871 562 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 MCM2P49736 904 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 CASP6P55212 293 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 RNASELQ05823 741 aaKnown RBP4.1□□□□□ -1.75
LIMA1-208ENST00000551691 KRTAP1-1Q07627 177 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 DMWDQ09019 674 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 MRPL49Q13405 166 aaKnown RBP4.1□□□□□ -1.75
LIMA1-208ENST00000551691 CAMK1Q14012 370 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 PRKD1Q15139 912 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-208ENST00000551691 SOWAHCQ53LP3 525 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-208ENST00000551691 SLC45A4Q5BKX6 768 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 FAM133BQ5BKY9 247 aaKnown RBP4.1□□□□□ -1.75
LIMA1-208ENST00000551691 ZNF569Q5MCW4 686 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 BEND3Q5T5X7 828 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 ATG16L1Q676U5 607 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 SLC30A10Q6XR72 485 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 XYLT1Q86Y38 959 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 FOXP4Q8IVH2 680 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-208ENST00000551691 FUKQ8N0W3 1084 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 OR8H2Q8N162 312 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 ANKRD44Q8N8A2 993 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 SUMF1Q8NBK3 374 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 RNF169Q8NCN4 708 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 SCAMP5Q8TAC9 235 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 NOC3LQ8WTT2 800 aaKnown RBP4.1□□□□□ -1.75
LIMA1-208ENST00000551691 HMGB4Q8WW32 186 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 ST8SIA4Q92187 359 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 CFHR4Q92496 578 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 RABGGTAQ92696 567 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 ZUFSPQ96AP4 578 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 SDCCAG3Q96C92 435 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 NEIL1Q96FI4 390 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-208ENST00000551691 CPPED1Q9BRF8 314 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-208ENST00000551691 CHCHD6Q9BRQ6 235 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 PHF7Q9BWX1 381 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-208ENST00000551691 FBXO28Q9NVF7 368 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 FBXO34Q9NWN3 711 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 NFU1Q9UMS0 254 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 DERAQ9Y315 318 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 CDY1Q9Y6F8 540 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 TRIP12Q14669 1992 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-208ENST00000551691 MROH7-TTC4A0A0A0MT08 1334 aa4.1□□□□□ -1.75
LIMA1-208ENST00000551691 SIP14410 1827 aa4.09□□□□□ -1.75
LIMA1-208ENST00000551691 A0A087X0M5 115 aa4.09□□□□□ -1.75
LIMA1-208ENST00000551691 A0A1B0GX30 115 aa4.09□□□□□ -1.75
LIMA1-208ENST00000551691 A0A1W2PPH5 198 aa4.09□□□□□ -1.75
LIMA1-208ENST00000551691 TBKBP1A7MCY6 615 aa4.09□□□□□ -1.75
LIMA1-208ENST00000551691 TISP43B9A030 160 aa4.09□□□□□ -1.75
LIMA1-208ENST00000551691 GRM8O00222 908 aa4.09□□□□□ -1.75
LIMA1-208ENST00000551691 TMCC2O75069 709 aa4.09□□□□□ -1.75
LIMA1-208ENST00000551691 FAM155BO75949 473 aa4.09□□□□□ -1.75
LIMA1-208ENST00000551691 FLOT1O75955 427 aa4.09□□□□□ -1.75
LIMA1-208ENST00000551691 ZNF202O95125 648 aa4.09□□□□□ -1.75
LIMA1-208ENST00000551691 PROS1P07225 676 aa4.09□□□□□ -1.75
LIMA1-208ENST00000551691 SLC3A2P08195 630 aaKnown RBP4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms