RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 KIAA1841Q6NSI8 718 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 TTC27Q6P3X3 843 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 CCDC137Q6PK04 289 aaKnown RBP8.69□□□□□ -1.02
VPS29-203ENST00000546588 SHISA2Q6UWI4 295 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 WFDC8Q8IUA0 241 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 CCDC185Q8N715 623 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 PQLC3Q8N755 202 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 CCDC26Q8TAB7 109 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 GRK7Q8WTQ7 553 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 DPF3Q92784 378 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 C1orf74Q96LT6 269 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 OLFM3Q96PB7 478 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 RNF157Q96PX1 679 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 HAPLN3Q96S86 360 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 ARPC5LQ9BPX5 153 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 LBHD1Q9BQE6 289 aaPredicted RBP8.69□□□□□ -1.02
VPS29-203ENST00000546588 LRRC1Q9BTT6 524 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 DDX47Q9H0S4 455 aaKnown RBP8.69□□□□□ -1.02
VPS29-203ENST00000546588 INSL5Q9Y5Q6 135 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 RAD54BQ9Y620 910 aa8.69□□□□□ -1.02
VPS29-203ENST00000546588 TNRC18O15417 2968 aaPredicted RBP8.69□□□□□ -1.02
VPS29-203ENST00000546588 NUP205Q92621 2012 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 IGLV3-10A0A075B6K4 115 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 CCDC189A1A4V9 331 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 LRRD1A4D1F6 860 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 C2orf71A6NGG8 1288 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 WASH4PA8MWX3 477 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 H3BNC9 293 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 DCLK1O15075 740 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 TP73O15350 636 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 LIASO43766 372 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 EIF4EBP3O60516 100 aaPredicted RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 OAS1P00973 400 aaKnown RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 CTSBP07858 339 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 CNPP09543 421 aaKnown RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 SLC2A3P11169 496 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 ZFXP17010 805 aaPredicted RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 MAGEA10P43363 369 aaPredicted RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 GPR15P49685 360 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 PGFP49763 221 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 KPNA1P52294 538 aaPredicted RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 ATXN1P54253 815 aaKnown RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 RNASE9P60153 205 aaKnown RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 VSNL1P62760 191 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 DEUP1Q05D60 604 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 ZNF33AQ06730 810 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 CUL1Q13616 776 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 PTK6Q13882 451 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 SMC1AQ14683 1233 aaKnown RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 PAFAH1B3Q15102 231 aaKnown RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 CA9Q16790 459 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 CDO1Q16878 200 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 SMTNL2Q2TAL5 461 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 MGAT5BQ3V5L5 792 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 C2orf27AQ580R0 203 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 ANKRD20A8PQ5CZ79 823 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 KCNT1Q5JUK3 1230 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 SPOUT1Q5T280 376 aaKnown RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 BTBD8Q5XKL5 378 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 DUPD1Q68J44 220 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 CCDC70Q6NSX1 233 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 VHLLQ6RSH7 139 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 C12orf40Q86WS4 652 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 TMC8Q8IU68 726 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 ZNF683Q8IZ20 524 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 MRPL43Q8N983 215 aaKnown RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 PCDH19Q8TAB3 1148 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 NDRG1Q92597 394 aaKnown RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 CASP10Q92851 521 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 AZIN2Q96A70 460 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 WDR89Q96FK6 387 aaPredicted RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 KLHDC7BQ96G42 594 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 FCRL2Q96LA5 508 aaPredicted RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 PGLYRP2Q96PD5 576 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 KLHL5Q96PQ7 755 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 CSPG4P5Q96PW8 444 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 KRT12Q99456 494 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 AP1M1Q9BXS5 423 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 PARD6BQ9BYG5 372 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 LMAN2LQ9H0V9 348 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 ZWILCHQ9H900 591 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 ANLNQ9NQW6 1124 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 TLR9Q9NR96 1032 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 GMIPQ9P107 970 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 PPARGC1AQ9UBK2 798 aaKnown RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 UXTQ9UBK9 157 aaPredicted RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 PCSK1NQ9UHG2 260 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 STOML2Q9UJZ1 356 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 PCDHB10Q9UN67 800 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 R3HDM2Q9Y2K5 976 aaKnown RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 HBS1LQ9Y450 684 aaKnown RBP8.68□□□□□ -1.02
VPS29-203ENST00000546588 NR2E3Q9Y5X4 410 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 COL4A3Q01955 1670 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 MIA3Q5JRA6 1907 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 DOCK6Q96HP0 2047 aa8.68□□□□□ -1.02
VPS29-203ENST00000546588 ZNF840PA6NDX5 716 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 PI4K2BG5E9Z4 385 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 CAPN9O14815 690 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 TGM5O43548 720 aa8.67□□□□□ -1.02
VPS29-203ENST00000546588 CST8O60676 142 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms