RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 ATP11CQ8NB49 1132 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 CEP76Q8TAP6 659 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 OR8D1Q8WZ84 308 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 ARHGEF2Q92974 986 aaKnown RBP12.14□□□□□ -0.47
YBX3-217ENST00000546164 TCEAL3Q969E4 200 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 PEBP4Q96S96 227 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 SPON2Q9BUD6 331 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 CEP44Q9C0F1 390 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 BTBD1Q9H0C5 482 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 SMOC1Q9H4F8 434 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 CATSPERBQ9H7T0 1116 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 ATP13A1Q9HD20 1204 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 ZNHIT6Q9NWK9 470 aaKnown RBP12.14□□□□□ -0.47
YBX3-217ENST00000546164 FBXL12Q9NXK8 326 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 DONSONQ9NYP3 566 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 SUSD2Q9UGT4 822 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 DNAI1Q9UI46 699 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 PPM1HQ9ULR3 514 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 AP4E1Q9UPM8 1137 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 NCKAP1Q9Y2A7 1128 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 RALGAPA1Q6GYQ0 2036 aa12.14□□□□□ -0.47
YBX3-217ENST00000546164 CNOT1A5YKK6 2376 aaKnown RBP12.14□□□□□ -0.47
YBX3-217ENST00000546164 TNRC6BQ9UPQ9 1833 aaKnown RBP12.14□□□□□ -0.47
YBX3-217ENST00000546164 NUMA1Q14980 2115 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 CHD5Q8TDI0 1954 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.13□□□□□ -0.47
YBX3-217ENST00000546164 LNP1A1A4G5 178 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 K7ERQ8 282 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 CBX4O00257 560 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 SLC30A4O14863 429 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 MID1O15344 667 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 SMAD6O43541 496 aaKnown RBP12.13□□□□□ -0.47
YBX3-217ENST00000546164 CREB3O43889 395 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 PRPSAP2O60256 369 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 SEMA4FO95754 770 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 GOT1P17174 413 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 GLDCP23378 1020 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 ACVRL1P37023 503 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 GALCP54803 685 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 GEMIN4P57678 1058 aaKnown RBP12.13□□□□□ -0.47
YBX3-217ENST00000546164 YBEYP58557 167 aaPredicted RBP12.13□□□□□ -0.47
YBX3-217ENST00000546164 GFPT1Q06210 699 aaPredicted RBP12.13□□□□□ -0.47
YBX3-217ENST00000546164 CA9Q16790 459 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 DUOXA1Q1HG43 343 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 ACCSLQ4AC99 568 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 AASDHQ4L235 1098 aaPredicted RBP12.13□□□□□ -0.47
YBX3-217ENST00000546164 TRIM61Q5EBN2 209 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 FAM46CQ5VWP2 391 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 IL31Q6EBC2 164 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 C22orf39Q6P5X5 142 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 FAM124AQ86V42 546 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 PLPP6Q8IY26 295 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 UMODL1-AS1Q8N2C9 162 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 AADATQ8N5Z0 425 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 DEFB119Q8N690 84 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 OR2A12Q8NGT7 310 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 ISG20Q96AZ6 181 aaKnown RBP12.13□□□□□ -0.47
YBX3-217ENST00000546164 ARHGEF26Q96DR7 871 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 CCDC114Q96M63 670 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 RTKNQ9BST9 563 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 SNRNP25Q9BV90 132 aaKnown RBP12.13□□□□□ -0.47
YBX3-217ENST00000546164 NUP85Q9BW27 656 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 TRIM5Q9C035 493 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 NOL6Q9H6R4 1146 aaKnown RBP12.13□□□□□ -0.47
YBX3-217ENST00000546164 CAPN10Q9HC96 672 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 RXFP3Q9NSD7 469 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 SERGEFQ9UGK8 458 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 IP6K2Q9UHH9 426 aa12.13□□□□□ -0.47
YBX3-217ENST00000546164 CDV3Q9UKY7 258 aaKnown RBP12.13□□□□□ -0.47
YBX3-217ENST00000546164 SPTBN2O15020 2390 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 ZSCAN5CA6NGD5 496 aaPredicted RBP12.12□□□□□ -0.47
YBX3-217ENST00000546164 PATE3B3GLJ2 98 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 AKR1B15C9JRZ8 316 aaPredicted RBP12.12□□□□□ -0.47
YBX3-217ENST00000546164 C1QTNF3-AMACRE9PGA6 284 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 SLC7A4O43246 635 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 GDF9O60383 454 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 ZNF821O75541 412 aaPredicted RBP12.12□□□□□ -0.47
YBX3-217ENST00000546164 CD160O95971 181 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 IL1BP01584 269 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 SERPINF2P08697 491 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 DRD3P35462 400 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 PI4KAP42356 2102 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 PSMD8P48556 350 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 HCAR3P49019 387 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 ADKP55263 362 aaKnown RBP12.12□□□□□ -0.47
YBX3-217ENST00000546164 TPI1P60174 286 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 IRX4P78413 519 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 POLD3Q15054 466 aaPredicted RBP12.12□□□□□ -0.47
YBX3-217ENST00000546164 DPYSL2Q16555 572 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 PARP15Q460N3 678 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 BOLA3Q53S33 107 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 LINGO4Q6UY18 593 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 PCDH20Q8N6Y1 951 aaKnown RBP12.12□□□□□ -0.47
YBX3-217ENST00000546164 C1orf216Q8TAB5 229 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 KCTD15Q96SI1 283 aaPredicted RBP12.12□□□□□ -0.47
YBX3-217ENST00000546164 EDEM2Q9BV94 578 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 NUSAP1Q9BXS6 441 aaKnown RBP12.12□□□□□ -0.47
YBX3-217ENST00000546164 RBSNQ9H1K0 784 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 NEUROG2Q9H2A3 272 aa12.12□□□□□ -0.47
YBX3-217ENST00000546164 DEF6Q9H4E7 631 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms