RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 CPQQ9Y646 472 aa12.51□□□□□ -0.41
AP003559.1-201ENST00000540906 LAMA3Q16787 3333 aa12.51□□□□□ -0.41
AP003559.1-201ENST00000540906 ERICH4A6NGS2 130 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 RAMP2O60895 175 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 RFPL2O75678 378 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 MMP2P08253 660 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 BRAFP15056 766 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 HOXD9P28356 352 aaPredicted RBP12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 SMAD3P84022 425 aaKnown RBP12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 DSC2Q02487 901 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 SERINC3Q13530 473 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 POLD3Q15054 466 aaPredicted RBP12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 KLHL38Q2WGJ6 581 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 CASC4Q6P4E1 433 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 KDELC2Q7Z4H8 507 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 MRPL43Q8N983 215 aaKnown RBP12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 ANKRD42Q8N9B4 389 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 IPMKQ8NFU5 416 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 GSDMBQ8TAX9 411 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 ATP2A3Q93084 1043 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 PABPC5Q96DU9 382 aaKnown RBP12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 NSMCE3Q96MG7 304 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 FICDQ9BVA6 458 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 SMG9Q9H0W8 520 aaKnown RBP12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 PDFQ9HBH1 243 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 TMEM51Q9NW97 253 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 MOCS1Q9NZB8 636 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 FETUBQ9UGM5 382 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 CHD9Q3L8U1 2897 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 ATG2AQ2TAZ0 1938 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 MTCL1Q9Y4B5 1905 aaKnown RBP12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 NOTCH4Q99466 2003 aa12.5□□□□□ -0.41
AP003559.1-201ENST00000540906 A0A1W2PRU2 124 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 CCDC78A2IDD5 438 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 CARNS1A5YM72 827 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 FAM159BA6NKW6 160 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 PMPCBO75439 489 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 ADRA1AP35348 466 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 MSH2P43246 934 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 CHRNA4P43681 627 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 SLC11A2P49281 568 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 CLCN4P51793 760 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 CREMQ03060 361 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 CRYMQ14894 314 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 RASA2Q15283 850 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 TIGD7Q6NT04 549 aaPredicted RBP12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 POTEHQ6S545 545 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 KDELC1Q6UW63 502 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 ZNF354CQ86Y25 554 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 CTAGE3PQ8IX95 158 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 TEX26Q8N6G2 289 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 MAB21L3Q8N8X9 362 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 TTC16Q8NEE8 873 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 RIN3Q8TB24 985 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 TCEAL4Q96EI5 215 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 SERAC1Q96JX3 654 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 MRGPRX2Q96LB1 330 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 CORO1BQ9BR76 489 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 STMN4Q9H169 189 aaPredicted RBP12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 C12orf65Q9H3J6 166 aaKnown RBP12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 ATXN3LQ9H3M9 355 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 TRABDQ9H4I3 376 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 SP110Q9HB58 689 aa12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 PPANQ9NQ55 473 aaKnown RBP12.49□□□□□ -0.41
AP003559.1-201ENST00000540906 HMX2A2RU54 273 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 GOLGA8RI6L899 631 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 GFRA2O00451 464 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 ATP9BO43861 1147 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 SPAG6O75602 509 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 LRG1P02750 347 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 ADH1AP07327 375 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 MYL4P12829 197 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 KRT15P19012 456 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 STX2P32856 288 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 MAPKAPK2P49137 400 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 SARNPP82979 210 aaKnown RBP12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 BMPR2Q13873 1038 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 ADGRF1Q5T601 910 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 Q6ZNB5 142 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 ZNF771Q7L3S4 317 aaPredicted RBP12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 ITIH5Q86UX2 942 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 PHOSPHO2Q8TCD6 241 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 WFDC5Q8TCV5 224 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 AZIN2Q96A70 460 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 ZNF778Q96MU6 729 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 TBL1YQ9BQ87 522 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 CNOT10Q9H9A5 744 aaKnown RBP12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 LRRC40Q9H9A6 602 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 KCNK9Q9NPC2 374 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 TLR9Q9NR96 1032 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 UXTQ9UBK9 157 aaPredicted RBP12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 MAFFQ9ULX9 164 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 IRAK3Q9Y616 596 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 PSAT1Q9Y617 370 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 PRAMEF11O60813 436 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 MOSPD3O75425 235 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 ZNF189O75820 626 aaPredicted RBP12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 ALDH1A2O94788 518 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 GLUD1P00367 558 aa12.48□□□□□ -0.41
AP003559.1-201ENST00000540906 EPCAMP16422 314 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms