RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 RCOR2Q8IZ40 523 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 OLFM3Q96PB7 478 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 MUC3BQ9H195 1237 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 ATP13A1Q9HD20 1204 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 VPS28Q9UK41 221 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 MMP17Q9ULZ9 603 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 HS3ST2Q9Y278 367 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 MRFAP1Q9Y605 127 aa13.28□□□□□ -0.28
CCDC42-202ENST00000539522 DAPK3O43293 454 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 MAFKO60675 156 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 ZRANB2O95218 330 aaKnown RBP eCLIP13.27□□□□□ -0.29
CCDC42-202ENST00000539522 C7P10643 843 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 POLR2EP19388 210 aaKnown RBP13.27□□□□□ -0.29
CCDC42-202ENST00000539522 DNA2P51530 1060 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 RWDD2BP57060 319 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 YBEYP58557 167 aaPredicted RBP13.27□□□□□ -0.29
CCDC42-202ENST00000539522 GALNT2Q10471 571 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 KLF1Q13351 362 aaPredicted RBP13.27□□□□□ -0.29
CCDC42-202ENST00000539522 PPP2R5EQ16537 467 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 PARP15Q460N3 678 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 TMCO3Q6UWJ1 677 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 MAMSTRQ6ZN01 415 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 B4GALNT4Q76KP1 1039 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 SH2D3CQ8N5H7 860 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 UBL4BQ8N7F7 174 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 CEP112Q8N8E3 955 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 ZNF557Q8N988 423 aaPredicted RBP13.27□□□□□ -0.29
CCDC42-202ENST00000539522 KCNV2Q8TDN2 545 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 PTPRN2Q92932 1015 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 OSBPL9Q96SU4 736 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 SPON2Q9BUD6 331 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 HEMGNQ9BXL5 484 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 SLC6A17Q9H1V8 727 aa13.27□□□□□ -0.29
CCDC42-202ENST00000539522 PRMT8Q9NR22 394 aaPredicted RBP13.27□□□□□ -0.29
CCDC42-202ENST00000539522 CBX4O00257 560 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 RIOK3O14730 519 aaKnown RBP13.26□□□□□ -0.29
CCDC42-202ENST00000539522 MUSKO15146 869 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 TIMM44O43615 452 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 ATP9BO43861 1147 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 CST8O60676 142 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 PRAMEF11O60813 436 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 GJB3O75712 270 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 SLU7O95391 586 aaKnown RBP13.26□□□□□ -0.29
CCDC42-202ENST00000539522 SRPRAP08240 638 aaKnown RBP13.26□□□□□ -0.29
CCDC42-202ENST00000539522 NTSR1P30989 418 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 COPAP53621 1224 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 TERF1P54274 439 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 OXCT1P55809 520 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 DYNLT1P63172 113 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 TUBB4BP68371 445 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 IHHQ14623 411 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 CYTH1Q15438 398 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 SIX1Q15475 284 aaPredicted RBP13.26□□□□□ -0.29
CCDC42-202ENST00000539522 CRY1Q16526 586 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 TFDP3Q5H9I0 405 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 TMEM31Q5JXX7 168 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 C9orf64Q5T6V5 341 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 KAZNQ674X7 775 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 IL31Q6EBC2 164 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 TSSK4Q6SA08 328 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 BBS12Q6ZW61 710 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 SYT13Q7L8C5 426 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 MAP7D3Q8IWC1 876 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 SPEM1Q8N4L4 309 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 DTWD2Q8NBA8 298 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 MNS1Q8NEH6 495 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 OSBPL8Q9BZF1 889 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 CD93Q9NPY3 652 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 PRSS16Q9NQE7 514 aa13.26□□□□□ -0.29
CCDC42-202ENST00000539522 R3HDM2Q9Y2K5 976 aaKnown RBP13.26□□□□□ -0.29
CCDC42-202ENST00000539522 FCF1Q9Y324 198 aaKnown RBP13.26□□□□□ -0.29
CCDC42-202ENST00000539522 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.26□□□□□ -0.29
CCDC42-202ENST00000539522 DFFAO00273 331 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 KCNK3O14649 394 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 PAPSS2O95340 614 aaPredicted RBP13.25□□□□□ -0.29
CCDC42-202ENST00000539522 ASLP04424 464 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 PAFAH1B1P43034 410 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 RGRP47804 291 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 SERPINH1P50454 418 aaKnown RBP13.25□□□□□ -0.29
CCDC42-202ENST00000539522 METAP1P53582 386 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 COPS2P61201 443 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 CKAP4Q07065 602 aaKnown RBP13.25□□□□□ -0.29
CCDC42-202ENST00000539522 CAMK2GQ13555 558 aaPredicted RBP13.25□□□□□ -0.29
CCDC42-202ENST00000539522 HNRNPA1L2Q32P51 320 aaKnown RBP13.25□□□□□ -0.29
CCDC42-202ENST00000539522 PREPLQ4J6C6 727 aaPredicted RBP13.25□□□□□ -0.29
CCDC42-202ENST00000539522 RFX6Q8HWS3 928 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 CHPFQ8IZ52 775 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 PGBD5Q8N414 524 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 LZTR1Q8N653 840 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 KDM1BQ8NB78 822 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 ACDQ96AP0 544 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 RBM41Q96IZ5 413 aaKnown RBP13.25□□□□□ -0.29
CCDC42-202ENST00000539522 FAM129BQ96TA1 746 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 FAM118BQ9BPY3 351 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 C2orf49Q9BVC5 232 aaPredicted RBP13.25□□□□□ -0.29
CCDC42-202ENST00000539522 LHX3Q9UBR4 397 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 ANKRD36A6QL64 1941 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 PLXND1Q9Y4D7 1925 aa13.25□□□□□ -0.29
CCDC42-202ENST00000539522 FANCMQ8IYD8 2048 aa13.24□□□□□ -0.29
CCDC42-202ENST00000539522 CXorf51AA0A1B0GTR3 108 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms