RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 CDK16Q00536 496 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 PTPAQ15257 358 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 PRAMEF18Q5VWM3 479 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 ZNF276Q8N554 614 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 ZNF606Q8WXB4 792 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 LENG9Q96B70 501 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 HGH1Q9BTY7 390 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 ARHGAP20Q9P2F6 1191 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 TDRKHQ9Y2W6 561 aaKnown RBP10.79□□□□□ -0.68
CLIP1-209ENST00000537178 RWDD3Q9Y3V2 267 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 WDR27A2RRH5 827 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 MTA2O94776 668 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 HIST1H2ABP04908 130 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 PECAM1P16284 738 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-209ENST00000537178 RAP1GAPP47736 663 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 HERVK_113P62684 666 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 TAF5Q15542 800 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 CRY1Q16526 586 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 HIST3H2AQ7L7L0 130 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 GLT6D1Q7Z4J2 308 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 GPSM1Q86YR5 675 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 ZSWIM2Q8NEG5 633 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 ZNF483Q8TF39 744 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-209ENST00000537178 HIST1H2ACQ93077 130 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 PTPRHQ9HD43 1115 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 TSPAN16Q9UKR8 245 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 ANKRD36CQ5JPF3 1778 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 MAPTP10636 758 aaKnown RBP10.79□□□□□ -0.68
CLIP1-209ENST00000537178 COX7A2P14406 83 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 CAP2P40123 477 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 GSTM5P46439 218 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 BCL2L1Q07817 233 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 NFIAQ12857 509 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 PLD1Q13393 1074 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 SPIDRQ14159 915 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 ACAP1Q15027 740 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 RD3Q7Z3Z2 195 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 AADATQ8N5Z0 425 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 ZNF655Q8N720 491 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-209ENST00000537178 Q96MT0 163 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 FAM126AQ9BYI3 521 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-209ENST00000537178 SEMA6BQ9H3T3 888 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 ASB7Q9H672 318 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 KCNK4Q9NYG8 393 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 ANKDD1BA6NHY2 528 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 NKRFO15226 690 aaKnown RBP eCLIP10.79□□□□□ -0.686e-6■■□□□ 12.6
CLIP1-209ENST00000537178 VTNP04004 478 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 ARP10275 920 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 CD44P16070 742 aaKnown RBP10.79□□□□□ -0.68
CLIP1-209ENST00000537178 TLX1P31314 330 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-209ENST00000537178 TGFBR2P37173 567 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 POLD2P49005 469 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 IL2P60568 153 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 DGCR6Q14129 220 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 CYP20A1Q6UW02 462 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 TFAP2DQ7Z6R9 452 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 ARMC8Q8IUR7 673 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 OR7A2PQ8NGA2 310 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 ZNF75CPQ92670 426 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-209ENST00000537178 GJD4Q96KN9 370 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-209ENST00000537178 POP1Q99575 1024 aaKnown RBP10.79□□□□□ -0.68
CLIP1-209ENST00000537178 TINF2Q9BSI4 451 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 DGCR6LQ9BY27 220 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 ARL15Q9NXU5 204 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 TBC1D30Q9Y2I9 924 aa10.79□□□□□ -0.68
CLIP1-209ENST00000537178 A0A087X1B8 175 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 LOC100506127A0A0U1RQW1 187 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 HLA-DQA2P01906 255 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 FECHP22830 423 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 DGKAP23743 735 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 LRPAP1P30533 357 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 SSTR1P30872 391 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 MAPK9P45984 424 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 SMIM11AP58511 58 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 USP46P62068 366 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 IRF8Q02556 426 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 GCNT1Q02742 428 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 IL27RAQ6UWB1 636 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 EIF3MQ7L2H7 374 aaKnown RBP10.78□□□□□ -0.68
CLIP1-209ENST00000537178 FAM220AQ7Z4H9 259 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 PROSER1Q86XN7 944 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 CHPFQ8IZ52 775 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 MSL3Q8N5Y2 521 aaKnown RBP10.78□□□□□ -0.68
CLIP1-209ENST00000537178 SCAIQ8N9R8 606 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 ZFP28Q8NHY6 868 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 EDEM1Q92611 657 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 PGM2Q96G03 612 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 FDXACB1Q9BRP7 624 aaPredicted RBP10.78□□□□□ -0.68
CLIP1-209ENST00000537178 SPATA5L1Q9BVQ7 753 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 LYVE1Q9Y5Y7 322 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 PLCH1Q4KWH8 1693 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 DYTNA2CJ06 578 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 CXCR2P25025 360 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 PPIL2Q13356 520 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 ZNHIT3Q15649 155 aaPredicted RBP10.78□□□□□ -0.68
CLIP1-209ENST00000537178 STYK1Q6J9G0 422 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 METTL7BQ6UX53 244 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 TMC3Q7Z5M5 1100 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 KBTBD8Q8NFY9 601 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 SMARCD1Q96GM5 515 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms