RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 ICA1LQ8NDH6 482 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.79□□□□□ -1.32
USP28-202ENST00000535607 MZB1Q8WU39 189 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 UCMAQ8WVF2 138 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 WDR60Q8WVS4 1066 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 CD101Q93033 1021 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 PTCD3Q96EY7 689 aaKnown RBP6.79□□□□□ -1.32
USP28-202ENST00000535607 PIGSQ96S52 555 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 TMEM209Q96SK2 561 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 RBM15Q96T37 977 aaKnown RBP eCLIP6.79□□□□□ -1.32
USP28-202ENST00000535607 HAUS8Q9BT25 410 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 SYT11Q9BT88 431 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 POLR3CQ9BUI4 534 aaPredicted RBP6.79□□□□□ -1.32
USP28-202ENST00000535607 NUP85Q9BW27 656 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 TSSK1BQ9BXA7 367 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 FAM126AQ9BYI3 521 aaPredicted RBP6.79□□□□□ -1.32
USP28-202ENST00000535607 FRMD8P1Q9BZ68 369 aaPredicted RBP6.79□□□□□ -1.32
USP28-202ENST00000535607 KLHL4Q9C0H6 718 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 TMEM39BQ9GZU3 492 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 TMEM206Q9H813 350 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 MANSC1Q9H8J5 431 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 PSTPIP2Q9H939 334 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 VAT1LQ9HCJ6 419 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 MLXIPLQ9NP71 852 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 HEY2Q9UBP5 337 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 TELO2Q9Y4R8 837 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 ASB1Q9Y576 335 aa6.79□□□□□ -1.32
USP28-202ENST00000535607 OTOFQ9HC10 1997 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 UBA6A0AVT1 1052 aaPredicted RBP6.78□□□□□ -1.32
USP28-202ENST00000535607 POC1B-GALNT4F8VUJ3 575 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 KLF11O14901 512 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 PMM2O15305 246 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 PSTPIP1O43586 416 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 AP1G1O43747 822 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 TBX10O75333 385 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 SPAG6O75602 509 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 TM7SF2O76062 418 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 FBXO21O94952 628 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 CBX6O95503 412 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 BAG2O95816 211 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 C4BPAP04003 597 aaKnown RBP6.78□□□□□ -1.32
USP28-202ENST00000535607 HNRNPCP07910 306 aaKnown RBP eCLIP6.78□□□□□ -1.32
USP28-202ENST00000535607 ITGA2BP08514 1039 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 UBTFL6P0CB48 400 aaPredicted RBP6.78□□□□□ -1.32
USP28-202ENST00000535607 DLATP10515 647 aaKnown RBP6.78□□□□□ -1.32
USP28-202ENST00000535607 RARBP10826 455 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 UQCRBP14927 111 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 SERPINB3P29508 390 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 MAPK4P31152 587 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 COPB2P35606 906 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 CHN2P52757 468 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 NCKAP1LP55160 1127 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 BPIFB4P59827 614 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 FKBP1BP68106 108 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 DBPQ10586 325 aaPredicted RBP6.78□□□□□ -1.32
USP28-202ENST00000535607 TRPC3Q13507 836 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 ABCB5Q2M3G0 1257 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 WDR72Q3MJ13 1102 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 MMEL1Q495T6 779 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 ACSBG2Q5FVE4 666 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 GPR158Q5T848 1215 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 C1orf146Q5VVC0 180 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 BROXQ5VW32 411 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 CD276Q5ZPR3 534 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 C1orf228Q6PIY5 440 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 LVRNQ6Q4G3 990 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 FRMD7Q6ZUT3 714 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 KCNK18Q7Z418 384 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 ANKRD23Q86SG2 305 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 MYLK4Q86YV6 388 aaPredicted RBP6.78□□□□□ -1.32
USP28-202ENST00000535607 PHYKPLQ8IUZ5 450 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 MAP7D3Q8IWC1 876 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 ZFPM1Q8IX07 1006 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 RHOT1Q8IXI2 618 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 ATP11CQ8NB49 1132 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 SLC44A5Q8NCS7 719 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 OR6Y1Q8NGX8 325 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 ARHGEF26Q96DR7 871 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 MTBPQ96DY7 904 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 DYNLL2Q96FJ2 89 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 AHCYL2Q96HN2 611 aaKnown RBP6.78□□□□□ -1.32
USP28-202ENST00000535607 TUBGCP5Q96RT8 1024 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 PPP1R16BQ96T49 567 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 ZNF341Q9BYN7 854 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 MRPS26Q9BYN8 205 aaKnown RBP6.78□□□□□ -1.32
USP28-202ENST00000535607 DCLK3Q9C098 648 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 MCOLN1Q9GZU1 580 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 BHMT2Q9H2M3 363 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 STN1Q9H668 368 aaKnown RBP6.78□□□□□ -1.32
USP28-202ENST00000535607 VPS37BQ9H9H4 285 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 C17orf75Q9HAS0 396 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 MRPL47Q9HD33 250 aaKnown RBP6.78□□□□□ -1.32
USP28-202ENST00000535607 TUFT1Q9NNX1 390 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 SAYSD1Q9NPB0 183 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 MTMR4Q9NYA4 1195 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 BTBD7Q9P203 1132 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 USP36Q9P275 1121 aaKnown RBP6.78□□□□□ -1.32
USP28-202ENST00000535607 TAGLN3Q9UI15 199 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 SHOC2Q9UQ13 582 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 DMTF1Q9Y222 760 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms