RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 SPEGQ15772 3267 aa15.09■□□□□ 0.01
VPS28-215ENST00000531924 DSPP15924 2871 aaKnown RBP15.08■□□□□ 0.01
VPS28-215ENST00000531924 A0A1W2PQU0 124 aa15.08■□□□□ 0
VPS28-215ENST00000531924 DRGXA6NNA5 263 aa15.08■□□□□ 0
VPS28-215ENST00000531924 K7ERQ8 282 aa15.08■□□□□ 0
VPS28-215ENST00000531924 CBX4O00257 560 aa15.08■□□□□ 0
VPS28-215ENST00000531924 SLC31A1O15431 190 aa15.08■□□□□ 0
VPS28-215ENST00000531924 RFPL3O75679 317 aa15.08■□□□□ 0
VPS28-215ENST00000531924 ENDOD1O94919 500 aa15.08■□□□□ 0
VPS28-215ENST00000531924 PCDH8O95206 1070 aa15.08■□□□□ 0
VPS28-215ENST00000531924 C1SP09871 688 aa15.08■□□□□ 0
VPS28-215ENST00000531924 RRM1P23921 792 aa15.08■□□□□ 0
VPS28-215ENST00000531924 RXRGP48443 463 aa15.08■□□□□ 0
VPS28-215ENST00000531924 DNA2P51530 1060 aa15.08■□□□□ 0
VPS28-215ENST00000531924 CYP4F3Q08477 520 aa15.08■□□□□ 0
VPS28-215ENST00000531924 KCNMA1Q12791 1236 aa15.08■□□□□ 0
VPS28-215ENST00000531924 SHBQ15464 509 aa15.08■□□□□ 0
VPS28-215ENST00000531924 ARL13BQ3SXY8 428 aa15.08■□□□□ 0
VPS28-215ENST00000531924 C2CD6Q53TS8 623 aa15.08■□□□□ 0
VPS28-215ENST00000531924 TCP11X2Q5H9J9 407 aa15.08■□□□□ 0
VPS28-215ENST00000531924 CT47A1Q5JQC4 288 aaPredicted RBP15.08■□□□□ 0
VPS28-215ENST00000531924 FKBP15Q5T1M5 1219 aa15.08■□□□□ 0
VPS28-215ENST00000531924 OTUD1Q5VV17 481 aaPredicted RBP15.08■□□□□ 0
VPS28-215ENST00000531924 NEK5Q6P3R8 708 aa15.08■□□□□ 0
VPS28-215ENST00000531924 NOP9Q86U38 636 aaKnown RBP15.08■□□□□ 0
VPS28-215ENST00000531924 TMIEQ8NEW7 156 aa15.08■□□□□ 0
VPS28-215ENST00000531924 OR2A12Q8NGT7 310 aa15.08■□□□□ 0
VPS28-215ENST00000531924 GRIN3AQ8TCU5 1115 aa15.08■□□□□ 0
VPS28-215ENST00000531924 NT5C3BQ969T7 300 aa15.08■□□□□ 0
VPS28-215ENST00000531924 HAPLN3Q96S86 360 aa15.08■□□□□ 0
VPS28-215ENST00000531924 PSMB7Q99436 277 aa15.08■□□□□ 0
VPS28-215ENST00000531924 ZYG11BQ9C0D3 744 aa15.08■□□□□ 0
VPS28-215ENST00000531924 SAMSN1Q9NSI8 373 aaKnown RBP15.08■□□□□ 0
VPS28-215ENST00000531924 TAB2Q9NYJ8 693 aa15.08■□□□□ 0
VPS28-215ENST00000531924 ARHGAP20Q9P2F6 1191 aa15.08■□□□□ 0
VPS28-215ENST00000531924 RAXQ9Y2V3 346 aa15.08■□□□□ 0
VPS28-215ENST00000531924 PKD1L2Q7Z442 2459 aa15.08■□□□□ 0
VPS28-215ENST00000531924 FREM2Q5SZK8 3169 aa15.08■□□□□ 0
VPS28-215ENST00000531924 A0A0D9SEW6 157 aa15.07■□□□□ 0
VPS28-215ENST00000531924 ILVBLA1L0T0 632 aa15.07■□□□□ 0
VPS28-215ENST00000531924 F8VZ95 297 aa15.07■□□□□ 0
VPS28-215ENST00000531924 CAPNS1P04632 268 aa15.07■□□□□ 0
VPS28-215ENST00000531924 MMEP08473 750 aa15.07■□□□□ 0
VPS28-215ENST00000531924 PRLRP16471 622 aa15.07■□□□□ 0
VPS28-215ENST00000531924 AKT2P31751 481 aa15.07■□□□□ 0
VPS28-215ENST00000531924 FLT3P36888 993 aa15.07■□□□□ 0
VPS28-215ENST00000531924 ATP11AP98196 1134 aa15.07■□□□□ 0
VPS28-215ENST00000531924 SLC20A2Q08357 652 aa15.07■□□□□ 0
VPS28-215ENST00000531924 BNIP3Q12983 259 aa15.07■□□□□ 0
VPS28-215ENST00000531924 DNAJC3Q13217 504 aa15.07■□□□□ 0
VPS28-215ENST00000531924 ARSIQ5FYB1 569 aa15.07■□□□□ 0
VPS28-215ENST00000531924 ZNF783Q6ZMS7 281 aa15.07■□□□□ 0
VPS28-215ENST00000531924 FAM131BQ86XD5 332 aa15.07■□□□□ 0
VPS28-215ENST00000531924 ZNF677Q86XU0 584 aa15.07■□□□□ 0
VPS28-215ENST00000531924 KLK6Q92876 244 aa15.07■□□□□ 0
VPS28-215ENST00000531924 FAM131CQ96AQ9 280 aa15.07■□□□□ 0
VPS28-215ENST00000531924 CFAP57Q96MR6 1250 aa15.07■□□□□ 0
VPS28-215ENST00000531924 MYOCQ99972 504 aa15.07■□□□□ 0
VPS28-215ENST00000531924 TNKS2Q9H2K2 1166 aa15.07■□□□□ 0
VPS28-215ENST00000531924 ATP13A1Q9HD20 1204 aa15.07■□□□□ 0
VPS28-215ENST00000531924 ANLNQ9NQW6 1124 aa15.07■□□□□ 0
VPS28-215ENST00000531924 TMPRSS4Q9NRS4 437 aa15.07■□□□□ 0
VPS28-215ENST00000531924 IL36AQ9UHA7 158 aa15.07■□□□□ 0
VPS28-215ENST00000531924 ANKRD11Q6UB99 2663 aaPredicted RBP15.07■□□□□ 0
VPS28-215ENST00000531924 C10orf142B7Z368 130 aa15.06■□□□□ 0
VPS28-215ENST00000531924 SMAD6O43541 496 aaKnown RBP15.06■□□□□ 0
VPS28-215ENST00000531924 GFPT2O94808 682 aa15.06■□□□□ 0
VPS28-215ENST00000531924 SDC4P31431 198 aa15.06■□□□□ 0
VPS28-215ENST00000531924 PIP5KL1Q5T9C9 394 aa15.06■□□□□ 0
VPS28-215ENST00000531924 RWDD4Q6NW29 188 aaKnown RBP15.06■□□□□ 0
VPS28-215ENST00000531924 C22orf39Q6P5X5 142 aa15.06■□□□□ 0
VPS28-215ENST00000531924 ERN2Q76MJ5 926 aaKnown RBP15.06■□□□□ 0
VPS28-215ENST00000531924 HORMAD1Q86X24 394 aa15.06■□□□□ 0
VPS28-215ENST00000531924 SPATS2Q86XZ4 545 aaKnown RBP15.06■□□□□ 0
VPS28-215ENST00000531924 DRC7Q8IY82 874 aa15.06■□□□□ 0
VPS28-215ENST00000531924 ZNF683Q8IZ20 524 aa15.06■□□□□ 0
VPS28-215ENST00000531924 RYBPQ8N488 228 aaPredicted RBP15.06■□□□□ 0
VPS28-215ENST00000531924 CHST14Q8NCH0 376 aa15.06■□□□□ 0
VPS28-215ENST00000531924 OR7D4Q8NG98 312 aa15.06■□□□□ 0
VPS28-215ENST00000531924 EPS8L1Q8TE68 723 aa15.06■□□□□ 0
VPS28-215ENST00000531924 HNRNPLLQ8WVV9 542 aaKnown RBP15.06■□□□□ 0
VPS28-215ENST00000531924 PCMTD1Q96MG8 357 aaPredicted RBP15.06■□□□□ 0
VPS28-215ENST00000531924 NAA15Q9BXJ9 866 aaKnown RBP15.06■□□□□ 0
VPS28-215ENST00000531924 CALN1Q9BXU9 219 aa15.06■□□□□ 0
VPS28-215ENST00000531924 VPS16Q9H269 839 aa15.06■□□□□ 0
VPS28-215ENST00000531924 METTL5Q9NRN9 209 aaKnown RBP15.06■□□□□ 0
VPS28-215ENST00000531924 DKK4Q9UBT3 224 aa15.06■□□□□ 0
VPS28-215ENST00000531924 GPSM3Q9Y4H4 160 aa15.06■□□□□ 0
VPS28-215ENST00000531924 CABIN1Q9Y6J0 2220 aa15.06■□□□□ 0
VPS28-215ENST00000531924 IGLV3-10A0A075B6K4 115 aa15.05■□□□□ -0
VPS28-215ENST00000531924 I6L893 689 aaPredicted RBP15.05■□□□□ -0
VPS28-215ENST00000531924 SDC3O75056 442 aa15.05■□□□□ -0
VPS28-215ENST00000531924 CTSLP07711 333 aa15.05■□□□□ -0
VPS28-215ENST00000531924 THEGLP0DJG4 465 aa15.05■□□□□ -0
VPS28-215ENST00000531924 CKMT2P17540 419 aa15.05■□□□□ -0
VPS28-215ENST00000531924 HNRNPA2B1P22626 353 aaKnown RBP15.05■□□□□ -0
VPS28-215ENST00000531924 ETFBP38117 255 aa15.05■□□□□ -0
VPS28-215ENST00000531924 TAS2R38P59533 333 aa15.05■□□□□ -0
VPS28-215ENST00000531924 NOMO3P69849 1222 aa15.05■□□□□ -0
VPS28-215ENST00000531924 CDR2Q01850 454 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms