RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 D6RAR5 112 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 H3BM21 787 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 NTN3O00634 580 aaPredicted RBP8.48□□□□□ -1.05
CD44-232ENST00000531118 MUSKO15146 869 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 SLFN14P0C7P3 912 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 P4HA1P13674 534 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 VAV1P15498 845 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 NME1P15531 152 aaKnown RBP8.48□□□□□ -1.05
CD44-232ENST00000531118 TRIM21P19474 475 aaKnown RBP8.48□□□□□ -1.05
CD44-232ENST00000531118 POU3F2P20265 443 aaPredicted RBP8.48□□□□□ -1.05
CD44-232ENST00000531118 HNRNPA2B1P22626 353 aaKnown RBP8.48□□□□□ -1.05
CD44-232ENST00000531118 SLC6A4P31645 630 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 AKT2P31751 481 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 HOXD13P35453 343 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 CD97P48960 835 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 STK19P49842 368 aaPredicted RBP8.48□□□□□ -1.05
CD44-232ENST00000531118 CNTN1Q12860 1018 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 CDH18Q13634 790 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 DEFB133Q30KQ1 61 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 FAM133BQ5BKY9 247 aaKnown RBP8.48□□□□□ -1.05
CD44-232ENST00000531118 PIK3R6Q5UE93 754 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 OR6B2Q6IFH4 312 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 MMS22LQ6ZRQ5 1243 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 STXBP4Q6ZWJ1 553 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 RAB11FIP2Q7L804 512 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 BHLHA9Q7RTU4 235 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 TRIM46Q7Z4K8 759 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 ABI3BPQ7Z7G0 1075 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 PARGQ86W56 976 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 ATCAYQ86WG3 371 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 XXYLT1Q8NBI6 393 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 SPATA20Q8TB22 786 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 KLK6Q92876 244 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 NAT6Q93015 286 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 CYFIP2Q96F07 1278 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 SPAG5Q96R06 1193 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 CCDC3Q9BQI4 270 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 PANK4Q9NVE7 773 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 STIM2Q9P246 746 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 SFMBT1Q9UHJ3 866 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 SHANK1Q9Y566 2161 aa8.48□□□□□ -1.05
CD44-232ENST00000531118 PRAMEF33A0A0G2JMD5 474 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 GOLGA6L7A0A1B0GV03 622 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 A0A1W2PQU0 124 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 A6NNZ2 444 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 LRRIQ3A6PVS8 624 aaPredicted RBP8.47□□□□□ -1.05
CD44-232ENST00000531118 CLIC2O15247 247 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 EIF3DO15371 548 aaKnown RBP eCLIP8.47□□□□□ -1.05
CD44-232ENST00000531118 SLC31A1O15431 190 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 IRAK2O43187 625 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 TGFB1I1O43294 461 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 AQP9O43315 295 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 PRAMEF10O60809 474 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 AGFG2O95081 481 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 BMP15O95972 392 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 TNFRSF8P28908 595 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 UQCRFS1P47985 274 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 CLDN2P57739 230 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 TAS2R38P59533 333 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 RAB41Q5JT25 222 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 RNF219Q5W0B1 726 aaPredicted RBP8.47□□□□□ -1.05
CD44-232ENST00000531118 ZNF787Q6DD87 383 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 SPOPLQ6IQ16 392 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 KYAT3Q6YP21 454 aaKnown RBP8.47□□□□□ -1.05
CD44-232ENST00000531118 SV2BQ7L1I2 683 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 ZFAND4Q86XD8 727 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 TICAM1Q8IUC6 712 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 SLC35F3Q8IY50 421 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 CARNMT1Q8N4J0 409 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 C9orf43Q8TAL5 461 aaPredicted RBP8.47□□□□□ -1.05
CD44-232ENST00000531118 FIBINQ8TAL6 211 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 MYEOVQ96EZ4 313 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 EPSTI1Q96J88 318 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 BOCQ9BWV1 1114 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 NT5C1AQ9BXI3 368 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 DUSP16Q9BY84 665 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 STRADBQ9C0K7 418 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 FOXJ2Q9P0K8 574 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 TFIP11Q9UBB9 837 aaKnown RBP8.47□□□□□ -1.05
CD44-232ENST00000531118 SLCO3A1Q9UIG8 710 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 SALL4Q9UJQ4 1053 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 SARDHQ9UL12 918 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 LOXL2Q9Y4K0 774 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 CEP83Q9Y592 693 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 CSNK1G3Q9Y6M4 447 aa8.47□□□□□ -1.05
CD44-232ENST00000531118 SETD2Q9BYW2 2564 aaPredicted RBP8.46□□□□□ -1.05
CD44-232ENST00000531118 A1L4Q6 167 aa8.46□□□□□ -1.06
CD44-232ENST00000531118 TYW5A2RUC4 315 aaKnown RBP8.46□□□□□ -1.06
CD44-232ENST00000531118 C1QTNF3-AMACRE9PGA6 284 aa8.46□□□□□ -1.06
CD44-232ENST00000531118 NVLO15381 856 aaKnown RBP8.46□□□□□ -1.06
CD44-232ENST00000531118 MTSS1O43312 755 aa8.46□□□□□ -1.06
CD44-232ENST00000531118 MOCS3O95396 460 aa8.46□□□□□ -1.06
CD44-232ENST00000531118 IGLV3-27P01718 113 aa8.46□□□□□ -1.06
CD44-232ENST00000531118 CSF2P04141 144 aa8.46□□□□□ -1.06
CD44-232ENST00000531118 JMJD7P0C870 316 aa8.46□□□□□ -1.06
CD44-232ENST00000531118 RNF224P0DH78 156 aa8.46□□□□□ -1.06
CD44-232ENST00000531118 ITIH1P19827 911 aa8.46□□□□□ -1.06
CD44-232ENST00000531118 CCKBRP32239 447 aa8.46□□□□□ -1.06
CD44-232ENST00000531118 PTGIRP43119 386 aa8.46□□□□□ -1.06
CD44-232ENST00000531118 RPS24P62847 133 aaKnown RBP8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms