RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.62□□□□□ -1.19
CD44-228ENST00000528455 NOP53Q9NZM5 478 aaKnown RBP7.62□□□□□ -1.19
CD44-228ENST00000528455 CWC15Q9P013 229 aaKnown RBP7.62□□□□□ -1.19
CD44-228ENST00000528455 COX16Q9P0S2 106 aa7.62□□□□□ -1.19
CD44-228ENST00000528455 LSM7Q9UK45 103 aaKnown RBP7.62□□□□□ -1.19
CD44-228ENST00000528455 AGO1Q9UL18 857 aaKnown RBP7.62□□□□□ -1.19
CD44-228ENST00000528455 CDH7Q9ULB5 785 aa7.62□□□□□ -1.19
CD44-228ENST00000528455 SH3BP1Q9Y3L3 701 aa7.62□□□□□ -1.19
CD44-228ENST00000528455 CPQQ9Y646 472 aa7.62□□□□□ -1.19
CD44-228ENST00000528455 NUP205Q92621 2012 aa7.62□□□□□ -1.19
CD44-228ENST00000528455 HELZP42694 1942 aaKnown RBP7.62□□□□□ -1.19
CD44-228ENST00000528455 A0A0A0MRY4 1105 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 LRRD1A4D1F6 860 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 WASH4PA8MWX3 477 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 H3BRJ5 948 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 LINC01387J3KSC0 135 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 GIPC1O14908 333 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 DAPK3O43293 454 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 MSI1O43347 362 aaKnown RBP7.61□□□□□ -1.19
CD44-228ENST00000528455 CEP104O60308 925 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 SRGAP2O75044 1071 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 HMBSP08397 361 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 CEBPBP17676 345 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 SP100P23497 879 aaPredicted RBP7.61□□□□□ -1.19
CD44-228ENST00000528455 ITPKAP23677 461 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 CORO1AP31146 461 aaKnown RBP7.61□□□□□ -1.19
CD44-228ENST00000528455 MARCKSL1P49006 195 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 TUBB4BP68371 445 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 ZXDAP98168 799 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 AUHQ13825 339 aaKnown RBP7.61□□□□□ -1.19
CD44-228ENST00000528455 TFDP2Q14188 446 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 DPYSL3Q14195 570 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 KRT81Q14533 505 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 CA9Q16790 459 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 SMTNL2Q2TAL5 461 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 MS4A13Q5J8X5 152 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 FAM78AQ5JUQ0 283 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 MPP7Q5T2T1 576 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 ARTNQ5T4W7 220 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 STXBP5Q5T5C0 1151 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 SEL1L2Q5TEA6 688 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 DCAF12L1Q5VU92 463 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 BZW1Q7L1Q6 419 aaKnown RBP7.61□□□□□ -1.19
CD44-228ENST00000528455 OTOP3Q7RTS5 596 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 SLC13A5Q86YT5 568 aaPredicted RBP7.61□□□□□ -1.19
CD44-228ENST00000528455 CCDC50Q8IVM0 306 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 MFSD6LQ8IWD5 586 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 ZNF683Q8IZ20 524 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 ZSCAN18Q8TBC5 510 aaPredicted RBP7.61□□□□□ -1.19
CD44-228ENST00000528455 SH3RF2Q8TEC5 729 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 COG1Q8WTW3 980 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 SMARCD2Q92925 531 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 ACSF2Q96CM8 615 aaPredicted RBP7.61□□□□□ -1.19
CD44-228ENST00000528455 FAF2Q96CS3 445 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 TMA16Q96EY4 203 aaKnown RBP7.61□□□□□ -1.19
CD44-228ENST00000528455 FRMD6Q96NE9 622 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 PRMT1Q99873 361 aaKnown RBP7.61□□□□□ -1.19
CD44-228ENST00000528455 CALN1Q9BXU9 219 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 FRMD8P1Q9BZ68 369 aaPredicted RBP7.61□□□□□ -1.19
CD44-228ENST00000528455 MAGEB5Q9BZ81 275 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 OSBPL8Q9BZF1 889 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 POMKQ9H5K3 350 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 SLITRK6Q9H5Y7 841 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 CATSPERBQ9H7T0 1116 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 ZFP14Q9HCL3 533 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 THG1LQ9NWX6 298 aaKnown RBP7.61□□□□□ -1.19
CD44-228ENST00000528455 CFAP97Q9P2B7 532 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 RAPGEFL1Q9UHV5 662 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 FEZ2Q9UHY8 353 aaPredicted RBP7.61□□□□□ -1.19
CD44-228ENST00000528455 CDH22Q9UJ99 828 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 HS3ST4Q9Y661 456 aa7.61□□□□□ -1.19
CD44-228ENST00000528455 NUP210Q8TEM1 1887 aaPredicted RBP7.61□□□□□ -1.19
CD44-228ENST00000528455 MYO10Q9HD67 2058 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 hCG_1818297A0A087WSY0 165 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 C2CD4DB7Z1M9 353 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 E9PAM4 449 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 F5H5T6 163 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 FAM72CH0Y354 149 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 FAM229AH3BQW9 127 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 EEF2KO00418 725 aaKnown RBP7.6□□□□□ -1.19
CD44-228ENST00000528455 GFRA2O00451 464 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 ZNF185O15231 689 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 NCAM2O15394 837 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 FGF10O15520 208 aaPredicted RBP7.6□□□□□ -1.19
CD44-228ENST00000528455 CREB3O43889 395 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 DEAF1O75398 565 aaPredicted RBP7.6□□□□□ -1.19
CD44-228ENST00000528455 LRIG2O94898 1065 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 KRT1P04264 644 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 CD48P09326 243 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 ZNF16P17020 682 aaPredicted RBP7.6□□□□□ -1.19
CD44-228ENST00000528455 GOT1P17174 413 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 EPHB2P29323 1055 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 HOXC13P31276 330 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 DAB2P98082 770 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 KLF1Q13351 362 aaPredicted RBP7.6□□□□□ -1.19
CD44-228ENST00000528455 SETDB1Q15047 1291 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 PAFAH1B3Q15102 231 aaKnown RBP7.6□□□□□ -1.19
CD44-228ENST00000528455 CCNG2Q16589 344 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 WHAMMP3Q1A5X7 153 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 MPPE1Q53F39 396 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms