RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 PDCL3Q9H2J4 239 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 PLEKHA5Q9HAU0 1116 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 RC3H2Q9HBD1 1191 aaKnown RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 NGRNQ9NPE2 291 aaKnown RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 SEMA3GQ9NS98 782 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 MYO1AQ9UBC5 1043 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.36□□□□□ -1.71
CD44-226ENST00000527889 CHORDC1Q9UHD1 332 aaPredicted RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 UBQLN1Q9UMX0 589 aaKnown RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 EDARQ9UNE0 448 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 PACSIN2Q9UNF0 486 aaPredicted RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 CNTN6Q9UQ52 1028 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 DERAQ9Y315 318 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 NME7Q9Y5B8 376 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 PCDHGB6Q9Y5F9 930 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 SNX9Q9Y5X1 595 aa4.36□□□□□ -1.71
CD44-226ENST00000527889 V9GYY5 206 aaPredicted RBP4.36□□□□□ -1.71
CD44-226ENST00000527889 CHD9Q3L8U1 2897 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 NUP210Q8TEM1 1887 aaPredicted RBP4.35□□□□□ -1.71
CD44-226ENST00000527889 ARL5CA6NH57 179 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 FAM90A27PA6NNH2 459 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 VGLL3A8MV65 326 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 BTNL10A8MVZ5 291 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 FAM227AF5H4B4 570 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 I3L4J1 428 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 PIRO00625 290 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 B3GALT2O43825 422 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 B4GALT3O60512 393 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 SRGAP2O75044 1071 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 ZNF623O75123 536 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 UBXN7O94888 489 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 POMCP01189 267 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 CD4P01730 458 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 ESR1P03372 595 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 FUCA1P04066 466 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 TUBB4AP04350 444 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 THP07101 528 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 HNRNPCP07910 306 aaKnown RBP eCLIP4.35□□□□□ -1.71
CD44-226ENST00000527889 CCDC159P0C7I6 412 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 GZMAP12544 262 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 UNGP13051 313 aaPredicted RBP4.35□□□□□ -1.71
CD44-226ENST00000527889 P4HA1P13674 534 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 CYP3A5P20815 502 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 RPL10P27635 214 aaKnown RBP4.35□□□□□ -1.71
CD44-226ENST00000527889 CYP2C18P33260 490 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 TAF6P49848 677 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 GATMP50440 423 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 CLCN7P51798 805 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 CDR1P51861 262 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 SH3BGRP55822 239 aaPredicted RBP4.35□□□□□ -1.71
CD44-226ENST00000527889 BPIFB4P59827 614 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 NOMO3P69849 1222 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 ALDH6A1Q02252 535 aaKnown RBP4.35□□□□□ -1.71
CD44-226ENST00000527889 TLE2Q04725 743 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 MYO1EQ12965 1108 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 BFSP2Q13515 415 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 GPNMBQ14956 572 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 TCTN1Q2MV58 587 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 UAP1L1Q3KQV9 507 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 LRIT3Q3SXY7 679 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 TRIM60Q495X7 471 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 PAN2Q504Q3 1202 aaKnown RBP4.35□□□□□ -1.71
CD44-226ENST00000527889 FAM133BQ5BKY9 247 aaKnown RBP4.35□□□□□ -1.71
CD44-226ENST00000527889 PITRM1Q5JRX3 1037 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 CYP4A22Q5TCH4 519 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 ACAD10Q6JQN1 1059 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 DENND1BQ6P3S1 775 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 MMS22LQ6ZRQ5 1243 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 EP400NLQ6ZTU2 488 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 TMPRSS7Q7RTY8 843 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 MRPL10Q7Z7H8 261 aaKnown RBP4.35□□□□□ -1.71
CD44-226ENST00000527889 ECHDC2Q86YB7 292 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 DENND1CQ8IV53 801 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 HACE1Q8IYU2 909 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 MCOLN2Q8IZK6 566 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 FBXL6Q8N531 539 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 FAM181AQ8N9Y4 354 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 MNS1Q8NEH6 495 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 TRIM58Q8NG06 486 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 ZNF564Q8TBZ8 553 aaPredicted RBP4.35□□□□□ -1.71
CD44-226ENST00000527889 CAGE1Q8TC20 777 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 HASPINQ8TF76 798 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 ZNF606Q8WXB4 792 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 CTNNBL1Q8WYA6 563 aaPredicted RBP4.35□□□□□ -1.71
CD44-226ENST00000527889 RFFLQ8WZ73 363 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 PGBD4Q96DM1 585 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 CYFIP2Q96F07 1278 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 CAPZA3Q96KX2 299 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 ZNF560Q96MR9 790 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 NOX5Q96PH1 765 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 ALS2CR12Q96Q35 445 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 PSMB7Q99436 277 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 PAAF1Q9BRP4 392 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 C11orf70Q9BRQ4 267 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 NUP85Q9BW27 656 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 CARD6Q9BX69 1037 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 B3GNT5Q9BYG0 378 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 TRIM7Q9C029 511 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 ISCUQ9H1K1 167 aa4.35□□□□□ -1.71
CD44-226ENST00000527889 PRDM12Q9H4Q4 367 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms