RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 STAM2O75886 525 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RASSF9O75901 435 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DNAJB5O75953 348 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT38O76015 456 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SEC14L2O76054 403 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RECQL5O94762 991 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DDHD2O94830 711 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KIAA0754O94854 1291 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HAUS5O94927 633 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SNX4O95219 450 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KIF20AO95235 890 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PDE8BO95263 885 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SIX3O95343 332 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRIM16O95361 564 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 APBB3O95704 486 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GGPS1O95749 300 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OLFM2O95897 454 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 F9P00740 461 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 VIPP01282 170 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC4A1P02730 911 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 AHSGP02765 367 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OPN1MWP04001 364 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 EIF2S1P05198 315 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FYNP06241 537 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HEXBP07686 556 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GJB1P08034 283 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANXA6P08133 673 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PDHA1P08559 390 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SPARCP09486 303 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 WEE2P0C1S8 567 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A15PP0C7V4 464 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A14PP0C7W9 464 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRR35P0CG20 571 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OPN1MW2P0DN77 364 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OPN1MW3P0DN78 364 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MYBL1P10243 752 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GAAP10253 952 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCP11498 1178 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CYP2A6P11509 494 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SFTPCP11686 197 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SRCP12931 536 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 IL1R1P14778 569 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 JUPP14923 745 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CPA1P15085 419 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZFXP17010 805 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TPH1P17752 444 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ERCC2P18074 760 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARF4P18085 180 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TYMPP19971 482 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DDCP20711 480 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CASTP20810 708 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TCEA1P23193 301 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GCSHP23434 173 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRKCHP24723 683 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCNCP24863 283 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTAFRP25105 342 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACVR2AP27037 513 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 EPHA8P29322 1005 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 EPHB2P29323 1055 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SERPINA4P29622 427 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRPAP1P30533 357 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADSLP30566 484 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GCH1P30793 250 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MAPK4P31152 587 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HOXA11P31270 313 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HOXC8P31273 242 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC5A2P31639 672 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 AKT1P31749 480 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCKARP32238 428 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCKBRP32239 447 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SREBF1P36956 1147 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPARGP37231 505 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CASRP41180 1078 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CASP3P42574 277 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DPP6P42658 865 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MATR3P43243 847 aaKnown RBP eCLIP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SSR1P43307 286 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC6A9P48067 706 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ME1P48163 572 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PIP4K2AP48426 406 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PIK3CGP48736 1102 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRPC1P48995 793 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC11A2P49281 568 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 AMPHP49418 695 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 NDUFV1P49821 464 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 LIG4P49917 911 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ENTPD1P49961 510 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CPT1AP50416 773 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANXA11P50995 505 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPC3P51654 580 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSD17B4P51659 736 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TKTL1P51854 596 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 STAT2P52630 851 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 VAV2P52735 878 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RBM5P52756 815 aaKnown RBP eCLIP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RCAN1P53805 252 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PNLIPRP1P54315 467 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRKAA2P54646 552 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC12A2P55011 1212 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC12A3P55017 1021 aa0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms