RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 RBM43Q6ZSC3 357 aaKnown RBP13.33□□□□□ -0.28
HMGCS1-205ENST00000508319 TMPRSS7Q7RTY8 843 aa13.33□□□□□ -0.28
HMGCS1-205ENST00000508319 TFAP2DQ7Z6R9 452 aa13.33□□□□□ -0.28
HMGCS1-205ENST00000508319 SETD3Q86TU7 594 aaPredicted RBP13.33□□□□□ -0.28
HMGCS1-205ENST00000508319 TRIM69Q86WT6 500 aa13.33□□□□□ -0.28
HMGCS1-205ENST00000508319 FAM131BQ86XD5 332 aa13.33□□□□□ -0.28
HMGCS1-205ENST00000508319 GATAD2AQ86YP4 633 aa13.33□□□□□ -0.28
HMGCS1-205ENST00000508319 DCAF4L2Q8NA75 395 aa13.33□□□□□ -0.28
HMGCS1-205ENST00000508319 ENOX1Q8TC92 643 aaKnown RBP13.33□□□□□ -0.28
HMGCS1-205ENST00000508319 CPA5Q8WXQ8 436 aa13.33□□□□□ -0.28
HMGCS1-205ENST00000508319 SKA1Q96BD8 255 aa13.33□□□□□ -0.28
HMGCS1-205ENST00000508319 C1orf74Q96LT6 269 aa13.33□□□□□ -0.28
HMGCS1-205ENST00000508319 CFAP57Q96MR6 1250 aa13.33□□□□□ -0.28
HMGCS1-205ENST00000508319 GDF3Q9NR23 364 aa13.33□□□□□ -0.28
HMGCS1-205ENST00000508319 MPP6Q9NZW5 540 aa13.33□□□□□ -0.28
HMGCS1-205ENST00000508319 TLR4O00206 839 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 EPHB6O15197 1021 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 SMAD6O43541 496 aaKnown RBP13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 BNIP3LO60238 219 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 GFPT2O94808 682 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 CHRNB2P17787 502 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 GLDCP23378 1020 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 EPHA8P29322 1005 aaPredicted RBP13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 CLCN6P51797 869 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 JAM2P57087 298 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 KRT83P78385 493 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 FMO1Q01740 532 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 INAVAQ3KP66 663 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 C6orf118Q5T5N4 469 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 ACBD5Q5T8D3 534 aaPredicted RBP13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 C22orf39Q6P5X5 142 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 LINGO4Q6UY18 593 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 ARCQ7LC44 396 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 EMC1Q8N766 993 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 ATP11CQ8NB49 1132 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 MSANTD4Q8NCY6 345 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 OR7D4Q8NG98 312 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 OR2A12Q8NGT7 310 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 SAP25Q8TEE9 199 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 HAPLN3Q96S86 360 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 VPS16Q9H269 839 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 METTL5Q9NRN9 209 aaKnown RBP13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 FAM207AQ9NSI2 230 aaPredicted RBP13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 TMEM51Q9NW97 253 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 FTSJ1Q9UET6 329 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 KNTC1P50748 2209 aa13.32□□□□□ -0.28
HMGCS1-205ENST00000508319 LOC400499M0QZD8 3231 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 RNF103O00237 685 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 CBX4O00257 560 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 ENDOD1O94919 500 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 CYP1A1P04798 512 aaPredicted RBP13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 ZNF18P17022 549 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 OR1E1P30953 314 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 CHRNA3P32297 505 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 SOX5P35711 763 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 NUDT1P36639 197 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 POLR2FP61218 127 aaKnown RBP13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 ATP11AP98196 1134 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 RAB6CQ53S08 254 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 LRRC31Q6UY01 552 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 PRPF39Q86UA1 669 aaKnown RBP13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 IQCHQ86VS3 1027 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 ZNF677Q86XU0 584 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 SPATS2Q86XZ4 545 aaKnown RBP13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 MARCH9Q86YJ5 346 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 MFSD2AQ8NA29 543 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 CHST14Q8NCH0 376 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 GPT2Q8TD30 523 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 ARRDC3Q96B67 414 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 CCDC114Q96M63 670 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 RAB6CQ9H0N0 254 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 PREBQ9HCU5 417 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 DMTF1Q9Y222 760 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 SIK3Q9Y2K2 1263 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 ATRXP46100 2492 aa13.31□□□□□ -0.28
HMGCS1-205ENST00000508319 ILVBLA1L0T0 632 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 KPNA3O00505 521 aaPredicted RBP13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 YKT6O15498 198 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 SRGAP2O75044 1071 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 ZNF821O75541 412 aaPredicted RBP13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 ZMPSTE24O75844 475 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 MMP8P22894 467 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 RXRGP48443 463 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 ARRB1P49407 418 aaPredicted RBP13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 CDR2Q01850 454 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 SMAD1Q15797 465 aaKnown RBP13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 SETMARQ53H47 684 aaPredicted RBP13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 SLC45A4Q5BKX6 768 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 SFMBT2Q5VUG0 894 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 ZNF783Q6ZMS7 281 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 KANSL1Q7Z3B3 1105 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 TMEM145Q8NBT3 493 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 TMIEQ8NEW7 156 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 MDM1Q8TC05 714 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 GRIN3AQ8TCU5 1115 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 C11orf70Q9BRQ4 267 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 TNKS2Q9H2K2 1166 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 CCDC86Q9H6F5 360 aaKnown RBP13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 ERVMER34-1Q9H9K5 563 aa13.3□□□□□ -0.28
HMGCS1-205ENST00000508319 NLRC4Q9NPP4 1024 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms