RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 SH2D3AQ9BRG2 576 aa4.38□□□□□ -1.71
HMGB1P28-201ENST00000507778 PIMREGQ9BSJ6 248 aa4.38□□□□□ -1.71
HMGB1P28-201ENST00000507778 SEMA4CQ9C0C4 833 aa4.38□□□□□ -1.71
HMGB1P28-201ENST00000507778 TTYH1Q9H313 450 aaPredicted RBP4.38□□□□□ -1.71
HMGB1P28-201ENST00000507778 ZNF304Q9HCX3 659 aa4.38□□□□□ -1.71
HMGB1P28-201ENST00000507778 SEMA4BQ9NPR2 832 aaPredicted RBP4.38□□□□□ -1.71
HMGB1P28-201ENST00000507778 PAPOLBQ9NRJ5 636 aaKnown RBP4.38□□□□□ -1.71
HMGB1P28-201ENST00000507778 IL1RAPL1Q9NZN1 696 aa4.38□□□□□ -1.71
HMGB1P28-201ENST00000507778 FLRT1Q9NZU1 646 aa4.38□□□□□ -1.71
HMGB1P28-201ENST00000507778 FBXO40Q9UH90 709 aa4.38□□□□□ -1.71
HMGB1P28-201ENST00000507778 CAMK2AQ9UQM7 478 aa4.38□□□□□ -1.71
HMGB1P28-201ENST00000507778 LAMP3Q9UQV4 416 aa4.38□□□□□ -1.71
HMGB1P28-201ENST00000507778 ZNF335Q9H4Z2 1342 aaPredicted RBP4.38□□□□□ -1.71
HMGB1P28-201ENST00000507778 C17orf113A0A1B0GUU1 675 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 SMIM35A0A1B0GVV1 85 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 WIPF3A6NGB9 483 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 RHODO00212 210 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 PRPF4O43172 522 aaKnown RBP eCLIP4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 CEP104O60308 925 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 NEURL1O76050 574 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 TMEM63AO94886 807 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 IL1AP01583 271 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 COX7A2P14406 83 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 CASP2P42575 452 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 PTPN9P43378 593 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 CCR9P51686 369 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 UFM1P61960 85 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 RPS13P62277 151 aaKnown RBP4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 PMPCAQ10713 525 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 PTP4A2Q12974 167 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 TSTQ16762 297 aaKnown RBP4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 INO80CQ6PI98 192 aaPredicted RBP4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 CCDC25Q86WR0 208 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 CPXM2Q8N436 756 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 FAR1Q8WVX9 515 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 CLMNQ96JQ2 1002 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 SIGLEC11Q96RL6 698 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 MPHOSPH8Q99549 860 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 TUBB6Q9BUF5 446 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 HIPK3Q9H422 1215 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 SLC32A1Q9H598 525 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 ENTPD7Q9NQZ7 604 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 GRHL1Q9NZI5 618 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 KCND2Q9NZV8 630 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 NLKQ9UBE8 527 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 UTS2RQ9UKP6 389 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 NAALADL1Q9UQQ1 740 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 CLDN16Q9Y5I7 305 aa4.37□□□□□ -1.71
HMGB1P28-201ENST00000507778 A0A087X0M5 115 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 A0A1B0GX30 115 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 TARSL2A2RTX5 802 aaKnown RBP4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 F5H0A9 414 aaPredicted RBP4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 F8W810 466 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 TP73O15350 636 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 RBMXL2O75526 392 aaKnown RBP4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 BCAR3O75815 825 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 DDAH2O95865 285 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 ADAP00813 363 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 SERPINC1P01008 464 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 WNT1P04628 370 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 CTSAP10619 480 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 UBL4AP11441 157 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 CAPN3P20807 821 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 ATP5F1P24539 256 aaPredicted RBP4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 EPHB2P29323 1055 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 SLC16A2P36021 539 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 ARL1P40616 181 aaPredicted RBP4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 EFNB1P98172 346 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 KRT32Q14532 448 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 TTC39AQ5SRH9 613 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 CCDC30Q5VVM6 783 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 HAUS3Q68CZ6 603 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 AAGABQ6PD74 315 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 C17orf99Q6UX52 265 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 IL20RBQ6UXL0 311 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 ATF7IPQ6VMQ6 1270 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 C4orf50Q6ZRC1 276 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 RRM2BQ7LG56 351 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 PRSS45Q7RTY3 260 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 CNGA4Q8IV77 575 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 CUL5Q93034 780 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 QTRT1Q9BXR0 403 aaKnown RBP4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 SLC25A18Q9H1K4 315 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 ACTR5Q9H9F9 607 aaPredicted RBP4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 ATP8A2Q9NTI2 1148 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 TMEM45AQ9NWC5 275 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 MAP3K20Q9NYL2 800 aaKnown RBP4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 TAS2R10Q9NYW0 307 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 ORC3Q9UBD5 711 aaPredicted RBP4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 PEMTQ9UBM1 199 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 SARDHQ9UL12 918 aa4.36□□□□□ -1.71
HMGB1P28-201ENST00000507778 KIR2DS5A0A0G2JLQ3 304 aa4.35□□□□□ -1.71
HMGB1P28-201ENST00000507778 ARHGAP10A1A4S6 786 aa4.35□□□□□ -1.71
HMGB1P28-201ENST00000507778 FOXO6A8MYZ6 492 aa4.35□□□□□ -1.71
HMGB1P28-201ENST00000507778 KIR2DS3K7RE56 304 aa4.35□□□□□ -1.71
HMGB1P28-201ENST00000507778 KIF1CO43896 1103 aaKnown RBP4.35□□□□□ -1.71
HMGB1P28-201ENST00000507778 DDX58O95786 925 aaKnown RBP4.35□□□□□ -1.71
HMGB1P28-201ENST00000507778 CHMP24386 653 aa4.35□□□□□ -1.71
HMGB1P28-201ENST00000507778 EPHA8P29322 1005 aaPredicted RBP4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms