RNA–Protein interactions for RNA: ENST00000496197.5

PTPN7-218, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,463 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-218	ENST00000496197	C2orf42	Q9NWW7	574 aa		13.77	□□□□□ -0.21
PTPN7-218	ENST00000496197	CACNA2D2	Q9NY47	1150 aa		13.77	□□□□□ -0.21
PTPN7-218	ENST00000496197	FCF1	Q9Y324	198 aa	Known RBP	13.77	□□□□□ -0.21
PTPN7-218	ENST00000496197	FAM170B	A6NMN3	283 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	TTC34	A8MYJ7	566 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	PGRMC1	O00264	195 aa	Known RBP	13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	PI15	O43692	258 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	ADAM23	O75077	832 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	GJB3	O75712	270 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	HLA-E	P13747	358 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	PRKCH	P24723	683 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	ETFB	P38117	255 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	WAS	P42768	502 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	NR2C2	P49116	596 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	SERPINH1	P50454	418 aa	Known RBP	13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	IL10RB	Q08334	325 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	SLC10A7	Q0GE19	358 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	ZBTB17	Q13105	803 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	PRKD1	Q15139	912 aa	Predicted RBP	13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	DGKK	Q5KSL6	1271 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	CCDC181	Q5TID7	509 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	SH2D3C	Q8N5H7	860 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	ALLC	Q8N6M5	410 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	PRELID2	Q8N945	189 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	IL17RC	Q8NAC3	791 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	CCNY	Q8ND76	341 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	SLC35B2	Q8TB61	432 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	USP33	Q8TEY7	942 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	ACD	Q96AP0	544 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	SHD	Q96IW2	340 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	QKI	Q96PU8	341 aa	Known RBP eCLIP	13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	CEP41	Q9BYV8	373 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	TMEM245	Q9H330	911 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	EPHX3	Q9H6B9	360 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	LMAN1L	Q9HAT1	526 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	SP110	Q9HB58	689 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	DONSON	Q9NYP3	566 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	THAP10	Q9P2Z0	257 aa	Predicted RBP	13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	DNPEP	Q9ULA0	475 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	HS3ST2	Q9Y278	367 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	KMT2E	Q8IZD2	1858 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	BDP1	A6H8Y1	2624 aa		13.76	□□□□□ -0.21
PTPN7-218	ENST00000496197	KCNK1	O00180	336 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	MUSK	O15146	869 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	LIAS	O43766	372 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	DCN	P07585	359 aa	Known RBP	13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	HNRNPL	P14866	589 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	RBL1	P28749	1068 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	RGR	P47804	291 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	EIF3E	P60228	445 aa	Known RBP	13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	AP1B1	Q10567	949 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	SNX1	Q13596	522 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	ENPP2	Q13822	863 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	CYTH1	Q15438	398 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	PREPL	Q4J6C6	727 aa	Predicted RBP	13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	PGBD5	Q8N414	524 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	FLCN	Q8NFG4	579 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	RPLP0P6	Q8NHW5	317 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	FRS2	Q8WU20	508 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	VOPP1	Q96AW1	172 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	TSGA13	Q96PP4	275 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	RAD54B	Q9Y620	910 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	NCOR1	O75376	2440 aa		13.75	□□□□□ -0.21
PTPN7-218	ENST00000496197	TMEM221	A6NGB7	291 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197		M0R296	226 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	SGK1	O00141	431 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	RNF103	O00237	685 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	TMCC1	O94876	653 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	KLF8	O95600	359 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	ASL	P04424	464 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	ATP5B	P06576	529 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	RBP3	P10745	1247 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	MX2	P20592	715 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	COL9A1	P20849	921 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	CCNC	P24863	283 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	CLCN6	P51797	869 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	GDF10	P55107	478 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	SULT2A1	Q06520	285 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	PDK1	Q15118	436 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	OASL	Q15646	514 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	FNDC3B	Q53EP0	1204 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	SLC45A4	Q5BKX6	768 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	TTC27	Q6P3X3	843 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	CCDC13	Q8IYE1	715 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	ATP11C	Q8NB49	1132 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	TFB1M	Q8WVM0	346 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	MAML1	Q92585	1016 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	EXOC2	Q96KP1	924 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	NSMCE3	Q96MG7	304 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	TNKS2	Q9H2K2	1166 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	DLGAP2	Q9P1A6	1054 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	LHX3	Q9UBR4	397 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	UBA2	Q9UBT2	640 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	SLC25A13	Q9UJS0	675 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	HPCAL4	Q9UM19	191 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	STON1	Q9Y6Q2	735 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	TTC24	A2A3L6	582 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197		H7C0C1	242 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	KIF2A	O00139	706 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	STK25	O00506	426 aa		13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms