RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 OTOP3Q7RTS5 596 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 DCLK2Q8N568 766 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 TRPV1Q8NER1 839 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 OR6Y1Q8NGX8 325 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 PIP4K2CQ8TBX8 421 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 PPP4R1Q8TF05 950 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 MLPHQ9BV36 600 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 WDCPQ9H6R7 721 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 S100A14Q9HCY8 104 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 OR12D3Q9UGF7 316 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 FBXW11Q9UKB1 542 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 APPL1Q9UKG1 709 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 VANGL2Q9ULK5 521 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 ZBTB14O43829 449 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 PLIN3O60664 434 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 B3GAT3O94766 335 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 LRIG2O94898 1065 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 JCHAINP01591 159 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 POLBP06746 335 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 CHRNGP07510 517 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 RAP1GDS1P52306 607 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 CBLBQ13191 982 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 NAPRTQ6XQN6 538 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 BHLHA9Q7RTU4 235 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 STRA8Q7Z7C7 330 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 RNF217Q8TC41 542 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 OR52B2Q96RD2 323 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 THAP1Q9NVV9 213 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 ITGB1P05556 798 aa16.83■□□□□ 0.29
CCDC88B-210ENST00000494566 SERPINA6P08185 405 aa16.83■□□□□ 0.29
CCDC88B-210ENST00000494566 MLNP12872 115 aa16.83■□□□□ 0.29
CCDC88B-210ENST00000494566 CTGFP29279 349 aa16.83■□□□□ 0.29
CCDC88B-210ENST00000494566 TBL3Q12788 808 aaKnown RBP16.83■□□□□ 0.29
CCDC88B-210ENST00000494566 TRMT5Q32P41 509 aaKnown RBP16.83■□□□□ 0.29
CCDC88B-210ENST00000494566 MMEL1Q495T6 779 aa16.83■□□□□ 0.29
CCDC88B-210ENST00000494566 TAC4Q86UU9 113 aa16.83■□□□□ 0.29
CCDC88B-210ENST00000494566 SPATA22Q8NHS9 363 aa16.83■□□□□ 0.29
CCDC88B-210ENST00000494566 RTP3Q9BQQ7 232 aa16.83■□□□□ 0.29
CCDC88B-210ENST00000494566 SNX15Q9NRS6 342 aa16.83■□□□□ 0.29
CCDC88B-210ENST00000494566 MKI67P46013 3256 aaKnown RBP16.83■□□□□ 0.29
CCDC88B-210ENST00000494566 HHLA1C9JL84 531 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 MGEA5O60502 916 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 TRPA1O75762 1119 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 EPHA3P29320 983 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 MSLNQ13421 630 aaPredicted RBP16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 IYDQ6PHW0 289 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 GALNT15Q8N3T1 639 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 SGF29Q96ES7 293 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 FERMT1Q9BQL6 677 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 ANKRD12Q6UB98 2062 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 M0QZ92 97 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 DFFAO00273 331 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 PEX1O43933 1283 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 MAGEC1O60732 1142 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 CD52P31358 61 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 NUDT2P50583 147 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 MRPS22P82650 360 aaKnown RBP16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 ROR2Q01974 943 aaKnown RBP16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 SEMA3BQ13214 749 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 DHDDSQ86SQ9 333 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 PSTKQ8IV42 348 aaKnown RBP16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 IFT43Q96FT9 208 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 ANKRD27Q96NW4 1050 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 MKS1Q9NXB0 559 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 IGSF9Q9P2J2 1179 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 CDH22Q9UJ99 828 aa16.83■□□□□ 0.28
CCDC88B-210ENST00000494566 SCN4AP35499 1836 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 MSI1O43347 362 aaKnown RBP16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 BUD23O43709 281 aaKnown RBP16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 HSPA4LO95757 839 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 TUBB3Q13509 450 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 ZNF460Q14592 562 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 FBXL19Q6PCT2 694 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 TRIM42Q8IWZ5 723 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 ZSCAN18Q8TBC5 510 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 ATP2A3Q93084 1043 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 DNAI2Q9GZS0 605 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 POMPQ9Y244 141 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 TOMM70O94826 608 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 MT-CYBP00156 380 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 MT-CO1P00395 513 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 RALBP11234 206 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 ZNF157P51786 506 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 DNAL1Q4LDG9 190 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 FSTL4Q6MZW2 842 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 TIFABQ6ZNK6 161 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 LRRTM3Q86VH5 581 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 ZNF419Q96HQ0 510 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 CNBD2Q96M20 576 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 SORT1Q99523 831 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 UBE2OQ9C0C9 1292 aaKnown RBP16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 EIF2B3Q9NR50 452 aaKnown RBP16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 IARS2Q9NSE4 1012 aaKnown RBP16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 SFMBT1Q9UHJ3 866 aa16.82■□□□□ 0.28
CCDC88B-210ENST00000494566 A0A1B0GTW7 788 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 TNPO2O14787 897 aaKnown RBP16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 GLRA3O75311 464 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 AP2A1O95782 977 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 OR4Q2P0C623 313 aa16.81■□□□□ 0.28
CCDC88B-210ENST00000494566 ENO3P13929 434 aaPredicted RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms