RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 SH2D3AQ9BRG2 576 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 C2orf40Q9H1Z8 148 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 OPA3Q9H6K4 179 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 NOD2Q9HC29 1040 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 PDRG1Q9NUG6 133 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 ARGLU1Q9NWB6 273 aaPredicted RBP3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 PI4KBQ9UBF8 816 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 FAM169AQ9Y6X4 670 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 CLIP1P30622 1438 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 ZCCHC11Q5TAX3 1644 aaKnown RBP3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 LRRIQ1Q96JM4 1722 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 CCDC196A0A1B0GTZ2 297 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 A8MV72 311 aaPredicted RBP3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 KIF28PB7ZC32 967 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 J3KTA2 159 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 IPO8O15397 1037 aaKnown RBP3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 TNFSF14O43557 240 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 FMO6PO60774 539 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 SRGAP2O75044 1071 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 TAF5LO75529 589 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 CAMTA2O94983 1202 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 ATP5BP06576 529 aaKnown RBP3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 GRPP07492 148 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 ATXN1LP0C7T5 689 aaKnown RBP3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 CYP2D6P10635 497 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 KLRC1P26715 233 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 GCH1P30793 250 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 NNMTP40261 264 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 HNF4AP41235 474 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 PDE1AP54750 535 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 UBASH3AP57075 661 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 LOXL3P58215 753 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 IL1RL1Q01638 556 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 CHAF1BQ13112 559 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 MAMLD1Q13495 774 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 KCNB1Q14721 858 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 ADIPOQQ15848 244 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 AMOTQ4VCS5 1084 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 AARS2Q5JTZ9 985 aaKnown RBP3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 PRAMEF17Q5VTA0 474 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 PLAG1Q6DJT9 500 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 RGS7BPQ6MZT1 257 aaPredicted RBP3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 TRAT1Q6PIZ9 186 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 SUSD1Q6UWL2 747 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 NAPRTQ6XQN6 538 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 SYNE3Q6ZMZ3 975 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 PIWIL3Q7Z3Z3 882 aaKnown RBP3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 SLFN11Q7Z7L1 901 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 PRPF39Q86UA1 669 aaKnown RBP3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 NUP93Q8N1F7 819 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 LRRC71Q8N4P6 559 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 TBC1D5Q92609 795 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 ATP2A3Q93084 1043 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 VPS33AQ96AX1 596 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 ELP4Q96EB1 424 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 CALML4Q96GE6 196 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 TSGA13Q96PP4 275 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 TMEM237Q96Q45 408 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 EYA3Q99504 573 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 MACROD1Q9BQ69 325 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 PI4K2AQ9BTU6 479 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 PTDSS2Q9BVG9 487 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 QTRT1Q9BXR0 403 aaKnown RBP3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 PLEKHA2Q9HB19 425 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 HEYLQ9NQ87 328 aaPredicted RBP3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 A1CFQ9NQ94 594 aaKnown RBP3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 DUSP22Q9NRW4 184 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 MRPS17Q9Y2R5 130 aaKnown RBP3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 DERAQ9Y315 318 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 PLEKHM1Q9Y4G2 1056 aa3.41□□□□□ -1.86
DEPDC1-204ENST00000489862 CEP162Q5TB80 1403 aa3.4□□□□□ -1.86
DEPDC1-204ENST00000489862 EPRSP07814 1512 aaKnown RBP3.4□□□□□ -1.86
DEPDC1-204ENST00000489862 CDK13Q14004 1512 aaKnown RBP3.4□□□□□ -1.86
DEPDC1-204ENST00000489862 MAGI3Q5TCQ9 1506 aa3.4□□□□□ -1.86
DEPDC1-204ENST00000489862 DIP2BQ9P265 1576 aa3.4□□□□□ -1.86
DEPDC1-204ENST00000489862 PPRC1Q5VV67 1664 aaKnown RBP3.4□□□□□ -1.86
DEPDC1-204ENST00000489862 RAPGEF6Q8TEU7 1601 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 EFCAB5A4FU69 1503 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 ZNF804BA4D1E1 1349 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 KDM3AQ9Y4C1 1321 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 ARHGAP10A1A4S6 786 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 TP73O15350 636 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 RPP40O75818 363 aaKnown RBP3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 IFNAR1P17181 557 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 KELP23276 732 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 ATP5F1P24539 256 aaPredicted RBP3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 EPHB2P29323 1055 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 KIF5BP33176 963 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 PGM1P36871 562 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 CYP4F2P78329 520 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 RPP30P78346 268 aaKnown RBP3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 LASP1Q14847 261 aaKnown RBP3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 TRIM71Q2Q1W2 868 aaKnown RBP3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 TRIM60Q495X7 471 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 SLC44A4Q53GD3 710 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 SETMARQ53H47 684 aaPredicted RBP3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 KRTCAP3Q53RY4 240 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 CEP78Q5JTW2 689 aa3.4□□□□□ -1.87
DEPDC1-204ENST00000489862 CCDC158Q5M9N0 1113 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 140.6 ms