RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 MUC3BQ9H195 1237 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 KIAA1468Q9P260 1216 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 VPS51Q9UID3 782 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 SNX10Q9Y5X0 201 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 AK5Q9Y6K8 562 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 A0A0D9SEW6 157 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 FOXN3O00409 490 aaPredicted RBP12.7□□□□□ -0.38
CPSF3-204ENST00000489403 TRIM38O00635 465 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 THEGLP0DJG4 465 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 PRLRP16471 622 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 RRM1P23921 792 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 ITPKBP27987 946 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 CHRNA3P32297 505 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 KRT9P35527 623 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 EIF2S3P41091 472 aaKnown RBP12.7□□□□□ -0.38
CPSF3-204ENST00000489403 SULT1E1P49888 294 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 KRT83P78385 493 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 INSM1Q01101 510 aaPredicted RBP12.7□□□□□ -0.38
CPSF3-204ENST00000489403 SEMG2Q02383 582 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 ZDHHC17Q8IUH5 632 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 ATP11CQ8NB49 1132 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 CHST14Q8NCH0 376 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 OR2A12Q8NGT7 310 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 RFFLQ8WZ73 363 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 PGAP3Q96FM1 320 aaPredicted RBP12.7□□□□□ -0.38
CPSF3-204ENST00000489403 KLHDC7BQ96G42 594 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 C2orf49Q9BVC5 232 aaPredicted RBP12.7□□□□□ -0.38
CPSF3-204ENST00000489403 WDCPQ9H6R7 721 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 SYNCQ9H7C4 482 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 FZD3Q9NPG1 666 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 RRN3Q9NYV6 651 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.7□□□□□ -0.38
CPSF3-204ENST00000489403 DNAJC12Q9UKB3 198 aa12.7□□□□□ -0.38
CPSF3-204ENST00000489403 FARP1Q9Y4F1 1045 aaPredicted RBP12.7□□□□□ -0.38
CPSF3-204ENST00000489403 DOCK4Q8N1I0 1966 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 BPTFQ12830 3046 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 A0A1W2PQU0 124 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 DRGXA6NNA5 263 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 KPNA3O00505 521 aaPredicted RBP12.69□□□□□ -0.38
CPSF3-204ENST00000489403 SLC31A1O15431 190 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 SMAD6O43541 496 aaKnown RBP12.69□□□□□ -0.38
CPSF3-204ENST00000489403 SIGLEC6O43699 453 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 GLDCP23378 1020 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 DGKAP23743 735 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 MTIF2P46199 727 aaKnown RBP12.69□□□□□ -0.38
CPSF3-204ENST00000489403 CXCR3P49682 368 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 SNX16P57768 344 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 RNASE9P60153 205 aaKnown RBP12.69□□□□□ -0.38
CPSF3-204ENST00000489403 DEUP1Q05D60 604 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 KCNMA1Q12791 1236 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 ZNF284Q2VY69 593 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 ARTNQ5T4W7 220 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 SMYD5Q6GMV2 418 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 NEK5Q6P3R8 708 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 C22orf39Q6P5X5 142 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 LINGO4Q6UY18 593 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 SETD3Q86TU7 594 aaPredicted RBP12.69□□□□□ -0.38
CPSF3-204ENST00000489403 HORMAD1Q86X24 394 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 SLC25A45Q8N413 288 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 DCAF4L2Q8NA75 395 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 TMIEQ8NEW7 156 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 OR13H1Q8NG92 308 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 NT5C3BQ969T7 300 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 CCDC114Q96M63 670 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 TBCBQ99426 244 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 CAAP1Q9H8G2 361 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 TMPRSS4Q9NRS4 437 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 UCKL1Q9NWZ5 548 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 MPP6Q9NZW5 540 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 STAP1Q9ULZ2 295 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 ZFR2Q9UPR6 939 aaKnown RBP12.69□□□□□ -0.38
CPSF3-204ENST00000489403 KNTC1P50748 2209 aa12.69□□□□□ -0.38
CPSF3-204ENST00000489403 IGLV3-10A0A075B6K4 115 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 FAM170AA1A519 330 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 PRNPP04156 253 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 GIMD1P0DJR0 217 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 HNRNPA2B1P22626 353 aaKnown RBP12.68□□□□□ -0.38
CPSF3-204ENST00000489403 CDH5P33151 784 aaPredicted RBP12.68□□□□□ -0.38
CPSF3-204ENST00000489403 CLCN6P51797 869 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 ZNF211Q13398 564 aaPredicted RBP12.68□□□□□ -0.38
CPSF3-204ENST00000489403 CAMK4Q16566 473 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 DPY19L2P1Q6NXN4 242 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 GCNT7Q6ZNI0 430 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 TFAP2DQ7Z6R9 452 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 FAM71AQ8IYT1 594 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 CACTIN-AS1Q8N1I8 211 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 DCBLD1Q8N8Z6 715 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 TMEM35BQ8NCS4 154 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 OR7D4Q8NG98 312 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 OR4C6Q8NH72 309 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 SNIP1Q8TAD8 396 aaKnown RBP12.68□□□□□ -0.38
CPSF3-204ENST00000489403 GRIN3AQ8TCU5 1115 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 CALN1Q9BXU9 219 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 TNKS2Q9H2K2 1166 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 DYRK4Q9NR20 520 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 KLHL11Q9NVR0 708 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 IL36AQ9UHA7 158 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 CLCA2Q9UQC9 943 aa12.68□□□□□ -0.38
CPSF3-204ENST00000489403 TDRD6O60522 2096 aaKnown RBP12.68□□□□□ -0.38
CPSF3-204ENST00000489403 SHROOM3Q8TF72 1996 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms