RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 SERPINB6P35237 376 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 CDKN2BP42772 138 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 FNTBP49356 437 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 PAPOLAP51003 745 aaKnown RBP11.28□□□□□ -0.6
UBE4B-210ENST00000488228 NDST2P52849 883 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 YBEYP58557 167 aaPredicted RBP11.28□□□□□ -0.6
UBE4B-210ENST00000488228 GBE1Q04446 702 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 TCF15Q12870 199 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 HNRNPA1L2Q32P51 320 aaKnown RBP11.28□□□□□ -0.6
UBE4B-210ENST00000488228 ACCSLQ4AC99 568 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 RETSATQ6NUM9 610 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 AADACL2Q6P093 401 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 MAMSTRQ6ZN01 415 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 ZNF662Q6ZS27 426 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 RFX6Q8HWS3 928 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 ATPAF2Q8N5M1 289 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 RNF10Q8N5U6 811 aaKnown RBP11.28□□□□□ -0.6
UBE4B-210ENST00000488228 PLD5Q8N7P1 536 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 ATP11CQ8NB49 1132 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.28□□□□□ -0.6
UBE4B-210ENST00000488228 FRS2Q8WU20 508 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 LRRN4Q8WUT4 740 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 RNF157Q96PX1 679 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 ALS2CR12Q96Q35 445 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 HERPUD2Q9BSE4 406 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 TPSD1Q9BZJ3 242 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 MKRN2Q9H000 416 aaKnown RBP11.28□□□□□ -0.6
UBE4B-210ENST00000488228 TNKS2Q9H2K2 1166 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 SP110Q9HB58 689 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 CD93Q9NPY3 652 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 PRSS16Q9NQE7 514 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 TRMT1Q9NXH9 659 aaKnown RBP11.28□□□□□ -0.6
UBE4B-210ENST00000488228 BCCIPQ9P287 314 aaKnown RBP eCLIP11.28□□□□□ -0.6
UBE4B-210ENST00000488228 FBXO4Q9UKT5 387 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 AMFRQ9UKV5 643 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.28□□□□□ -0.6
UBE4B-210ENST00000488228 PCDHA3Q9Y5H8 950 aa11.28□□□□□ -0.6
UBE4B-210ENST00000488228 VPS13AQ96RL7 3174 aa11.27□□□□□ -0.6
UBE4B-210ENST00000488228 hCG_1818297A0A087WSY0 165 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 EDDM13A0A1B0GTR0 161 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 CCDC66A2RUB6 948 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 ARHGAP42A6NI28 874 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 ZNF487B1APH4 448 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 H0Y858 1186 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 J3KR12 359 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 APOL1O14791 398 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 DDX3YO15523 660 aaKnown RBP11.27□□□□□ -0.61
UBE4B-210ENST00000488228 KDELR3O43731 214 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 ATP9BO43861 1147 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 PRAMEF11O60813 436 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 TMCC1O94876 653 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 CD160O95971 181 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 NUBP1P53384 320 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 COPAP53621 1224 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 ADCY2Q08462 1091 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 ZNF211Q13398 564 aaPredicted RBP11.27□□□□□ -0.61
UBE4B-210ENST00000488228 CAMK2GQ13555 558 aaPredicted RBP11.27□□□□□ -0.61
UBE4B-210ENST00000488228 PAFAH1B3Q15102 231 aaKnown RBP11.27□□□□□ -0.61
UBE4B-210ENST00000488228 E2F5Q15329 346 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 DLG2Q15700 870 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 TAZQ16635 292 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 DCAF12L1Q5VU92 463 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 KAZNQ674X7 775 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 SLC9A4Q6AI14 798 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 KIAA1324Q6UXG2 1013 aaKnown RBP11.27□□□□□ -0.61
UBE4B-210ENST00000488228 NPNTQ6UXI9 565 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 REXO1L1PQ8IX06 675 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 STK40Q8N2I9 435 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 LZTR1Q8N653 840 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 KDM1BQ8NB78 822 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 EXD1Q8NHP7 514 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 RBM41Q96IZ5 413 aaKnown RBP11.27□□□□□ -0.61
UBE4B-210ENST00000488228 TM6SF2Q9BZW4 377 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 PDFQ9HBH1 243 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 POLMQ9NP87 494 aaPredicted RBP11.27□□□□□ -0.61
UBE4B-210ENST00000488228 DONSONQ9NYP3 566 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 HPCAL4Q9UM19 191 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 HCN4Q9Y3Q4 1203 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 ABCA7Q8IZY2 2146 aa11.27□□□□□ -0.61
UBE4B-210ENST00000488228 SDK1Q7Z5N4 2213 aa11.26□□□□□ -0.61
UBE4B-210ENST00000488228 MIF4GDA9UHW6 222 aaKnown RBP11.26□□□□□ -0.61
UBE4B-210ENST00000488228 ZSCAN12O43309 604 aa11.26□□□□□ -0.61
UBE4B-210ENST00000488228 ZNF821O75541 412 aaPredicted RBP11.26□□□□□ -0.61
UBE4B-210ENST00000488228 ALDH1A2O94788 518 aa11.26□□□□□ -0.61
UBE4B-210ENST00000488228 ZRANB2O95218 330 aaKnown RBP eCLIP11.26□□□□□ -0.61
UBE4B-210ENST00000488228 PECAM1P16284 738 aaPredicted RBP11.26□□□□□ -0.61
UBE4B-210ENST00000488228 NNMTP40261 264 aa11.26□□□□□ -0.61
UBE4B-210ENST00000488228 PSMD8P48556 350 aa11.26□□□□□ -0.61
UBE4B-210ENST00000488228 PEX5P50542 639 aa11.26□□□□□ -0.61
UBE4B-210ENST00000488228 CLCN6P51797 869 aa11.26□□□□□ -0.61
UBE4B-210ENST00000488228 RWDD2BP57060 319 aa11.26□□□□□ -0.61
UBE4B-210ENST00000488228 GALNT2Q10471 571 aa11.26□□□□□ -0.61
UBE4B-210ENST00000488228 SLC10A2Q12908 348 aaPredicted RBP11.26□□□□□ -0.61
UBE4B-210ENST00000488228 SRSF5Q13243 272 aaKnown RBP11.26□□□□□ -0.61
UBE4B-210ENST00000488228 ATXN7L2Q5T6C5 722 aaPredicted RBP11.26□□□□□ -0.61
UBE4B-210ENST00000488228 C9orf64Q5T6V5 341 aa11.26□□□□□ -0.61
UBE4B-210ENST00000488228 RASSF3Q86WH2 238 aa11.26□□□□□ -0.61
UBE4B-210ENST00000488228 VSIG1Q86XK7 387 aa11.26□□□□□ -0.61
UBE4B-210ENST00000488228 PGBD3Q8N328 593 aa11.26□□□□□ -0.61
UBE4B-210ENST00000488228 C17orf53Q8N3J3 647 aaPredicted RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms