RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 EBF3Q9H4W6 596 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 CNGB3Q9NQW8 809 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 OXSMQ9NWU1 459 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 MIOSQ9NXC5 875 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 TRHDEQ9UKU6 1024 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 CLEC11AQ9Y240 323 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 RAD54BQ9Y620 910 aa18.28■□□□□ 0.52
VIM-206ENST00000487938 MAGEB16A2A368 324 aa18.27■□□□□ 0.52
VIM-206ENST00000487938 UNCXA6NJT0 531 aa18.27■□□□□ 0.52
VIM-206ENST00000487938 TIMM44O43615 452 aa18.27■□□□□ 0.52
VIM-206ENST00000487938 FSCBQ5H9T9 825 aa18.27■□□□□ 0.52
VIM-206ENST00000487938 ARHGAP36Q6ZRI8 547 aa18.27■□□□□ 0.52
VIM-206ENST00000487938 DHDDSQ86SQ9 333 aa18.27■□□□□ 0.52
VIM-206ENST00000487938 TSPAN18Q96SJ8 248 aa18.27■□□□□ 0.52
VIM-206ENST00000487938 GAD1Q99259 594 aa18.27■□□□□ 0.52
VIM-206ENST00000487938 TCF7L2Q9NQB0 619 aa18.27■□□□□ 0.52
VIM-206ENST00000487938 FLRT1Q9NZU1 646 aa18.27■□□□□ 0.52
VIM-206ENST00000487938 ARHGAP26Q9UNA1 814 aa18.27■□□□□ 0.52
VIM-206ENST00000487938 RUVBL2Q9Y230 463 aaKnown RBP18.27■□□□□ 0.52
VIM-206ENST00000487938 BPTFQ12830 3046 aa18.27■□□□□ 0.51
VIM-206ENST00000487938 IQCA1LA6NCM1 817 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 ERI2A8K979 691 aaKnown RBP18.26■□□□□ 0.51
VIM-206ENST00000487938 TMEM114B3SHH9 223 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 C9IYK1 514 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 LYNP07948 512 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 SERPINB6P35237 376 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 GJA9P57773 515 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 RWDD4Q6NW29 188 aaKnown RBP18.26■□□□□ 0.51
VIM-206ENST00000487938 FBXW8Q8N3Y1 598 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 CNTD1Q8N815 330 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 C3orf58Q8NDZ4 430 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 SREK1Q8WXA9 508 aaKnown RBP18.26■□□□□ 0.51
VIM-206ENST00000487938 SCYL1Q96KG9 808 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 TSC22D3Q99576 134 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 EPAS1Q99814 870 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 MCMBPQ9BTE3 642 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 ACE2Q9BYF1 805 aaPredicted RBP18.26■□□□□ 0.51
VIM-206ENST00000487938 UNKQ9C0B0 810 aaKnown RBP18.26■□□□□ 0.51
VIM-206ENST00000487938 ILKAPQ9H0C8 392 aaPredicted RBP18.26■□□□□ 0.51
VIM-206ENST00000487938 SIK2Q9H0K1 926 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 TLK1Q9UKI8 766 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 ASB3Q9Y575 518 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 HHLA1C9JL84 531 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 DFFAO00273 331 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 AIM2O14862 343 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 SBK3P0C264 359 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 GRIA4P48058 902 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 CSE1LP55060 971 aaKnown RBP18.26■□□□□ 0.51
VIM-206ENST00000487938 BTKQ06187 659 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 CDH17Q12864 832 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 USP10Q14694 798 aaKnown RBP18.26■□□□□ 0.51
VIM-206ENST00000487938 RAB41Q5JT25 222 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 THEMIS2Q5TEJ8 643 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 FOXB2Q5VYV0 432 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 BHLHA9Q7RTU4 235 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 SPATA6LQ8N4H0 392 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 TMEM151AQ8N4L1 468 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 ZSCAN18Q8TBC5 510 aaPredicted RBP18.26■□□□□ 0.51
VIM-206ENST00000487938 PAAF1Q9BRP4 392 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 SSX2IPQ9Y2D8 614 aa18.26■□□□□ 0.51
VIM-206ENST00000487938 MTSS1O43312 755 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 MT-CYBP00156 380 aaPredicted RBP18.25■□□□□ 0.51
VIM-206ENST00000487938 AHSGP02765 367 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 GABRB3P28472 473 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 EPHA3P29320 983 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 ZNF460Q14592 562 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 SFT2D3Q587I9 215 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 PPM1LQ5SGD2 360 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 ANKRD23Q86SG2 305 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 ZC3HC1Q86WB0 502 aaKnown RBP18.25■□□□□ 0.51
VIM-206ENST00000487938 SLC41A1Q8IVJ1 513 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 KCTD4Q8WVF5 259 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 PGAP3Q96FM1 320 aaPredicted RBP18.25■□□□□ 0.51
VIM-206ENST00000487938 NR1H4Q96RI1 486 aaPredicted RBP18.25■□□□□ 0.51
VIM-206ENST00000487938 TUBGCP5Q96RT8 1024 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 C17orf102A2RUQ5 167 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 PIGNO95427 931 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 GLDCP23378 1020 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 LHX1P48742 406 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 CXCR3P49682 368 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 NAGLUP54802 743 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 CTBP1Q13363 440 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 FRG1Q14331 258 aaKnown RBP18.25■□□□□ 0.51
VIM-206ENST00000487938 PRPSAP1Q14558 356 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 POU6F1Q14863 301 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 GSTA3Q16772 222 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 ANO4Q32M45 955 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 ARL13AQ5H913 290 aaPredicted RBP18.25■□□□□ 0.51
VIM-206ENST00000487938 C1QTNF1Q9BXJ1 281 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 NUF2Q9BZD4 464 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 BRD8Q9H0E9 1235 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 ZDHHC2Q9UIJ5 367 aa18.25■□□□□ 0.51
VIM-206ENST00000487938 EME2A4GXA9 379 aaPredicted RBP18.24■□□□□ 0.51
VIM-206ENST00000487938 CASTOR2A6NHX0 329 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 HAS3O00219 553 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 RAG1P15918 1043 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 LSM12Q3MHD2 195 aaKnown RBP18.24■□□□□ 0.51
VIM-206ENST00000487938 INTS6LQ5JSJ4 861 aaKnown RBP18.24■□□□□ 0.51
VIM-206ENST00000487938 NAPEPLDQ6IQ20 393 aa18.24■□□□□ 0.51
VIM-206ENST00000487938 KDELC2Q7Z4H8 507 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms