RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 TNNT3P45378 269 aaPredicted RBP8.23□□□□□ -1.09
USP40-216ENST00000485943 PSMD8P48556 350 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 MRE11P49959 708 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 HDAC4P56524 1084 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 PTP4A2Q12974 167 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 GAS6Q14393 721 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 GAB4Q2WGN9 574 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 FUT11Q495W5 492 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 AASDHQ4L235 1098 aaPredicted RBP8.23□□□□□ -1.09
USP40-216ENST00000485943 SH3PXD2AQ5TCZ1 1133 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 E4F1Q66K89 784 aaPredicted RBP8.23□□□□□ -1.09
USP40-216ENST00000485943 PKN3Q6P5Z2 889 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 ZNF783Q6ZMS7 281 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 FAM124AQ86V42 546 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 DNAAF5Q86Y56 855 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 CCDC50Q8IVM0 306 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 CCDC185Q8N715 623 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 ZNF366Q8N895 744 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 DCAF4L2Q8NA75 395 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 TSEN2Q8NCE0 465 aaKnown RBP8.23□□□□□ -1.09
USP40-216ENST00000485943 MDGA1Q8NFP4 955 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 RLN3Q8WXF3 142 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 RUBCNQ92622 972 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 IGSF8Q969P0 613 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 NT5C3BQ969T7 300 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 BAG1Q99933 345 aaPredicted RBP8.23□□□□□ -1.09
USP40-216ENST00000485943 MIR1-1HGQ9H1L0 117 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 MAGEH1Q9H213 219 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.23□□□□□ -1.09
USP40-216ENST00000485943 CALCOCO1Q9P1Z2 691 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 PPARGC1AQ9UBK2 798 aaKnown RBP8.23□□□□□ -1.09
USP40-216ENST00000485943 FBXO10Q9UK96 956 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 FZD10Q9ULW2 581 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 SCML1Q9UN30 329 aa8.23□□□□□ -1.09
USP40-216ENST00000485943 MUC3AQ02505 3323 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 TARSL2A2RTX5 802 aaKnown RBP8.22□□□□□ -1.09
USP40-216ENST00000485943 PRR23AA6NEV1 266 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 TMEM191CA6NGB0 347 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 ZSCAN5CA6NGD5 496 aaPredicted RBP8.22□□□□□ -1.09
USP40-216ENST00000485943 LRRC72A6NJI9 287 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 WASH3PC4AMC7 463 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 NEMP1O14524 444 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 FOXD2O60548 495 aaPredicted RBP8.22□□□□□ -1.09
USP40-216ENST00000485943 RNASEH2AO75792 299 aaKnown RBP8.22□□□□□ -1.09
USP40-216ENST00000485943 CNTN5O94779 1100 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 LRIG2O94898 1065 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 ENDOD1O94919 500 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 CFIP05156 583 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 PRKCHP24723 683 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 MZF1P28698 734 aaPredicted RBP8.22□□□□□ -1.09
USP40-216ENST00000485943 MIPP30301 263 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 HOXA6P31267 233 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 HNRNPH3P31942 346 aaKnown RBP8.22□□□□□ -1.09
USP40-216ENST00000485943 PCK1P35558 622 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 CDH6P55285 790 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 SNRPD1P62314 119 aaKnown RBP8.22□□□□□ -1.09
USP40-216ENST00000485943 GNA12Q03113 381 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 SLC20A2Q08357 652 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 FZD5Q13467 585 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 FSCBQ5H9T9 825 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 KCNT1Q5JUK3 1230 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 WDR45BQ5MNZ6 344 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 LYSMD4Q5XG99 296 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 HGSNATQ68CP4 663 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 TMCO3Q6UWJ1 677 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 ARMCX6Q7L4S7 300 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 RABEPKQ7Z6M1 372 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 C14orf80Q86SX3 495 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 KBTBD6Q86V97 674 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 PSTKQ8IV42 348 aaKnown RBP8.22□□□□□ -1.09
USP40-216ENST00000485943 SFTPA1Q8IWL2 248 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 APCDD1Q8J025 514 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.22□□□□□ -1.09
USP40-216ENST00000485943 WFDC5Q8TCV5 224 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 RFFLQ8WZ73 363 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 PIGKQ92643 395 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 SKA1Q96BD8 255 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 PANX2Q96RD6 677 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 ACOX2Q99424 681 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 PRMT1Q99873 361 aaKnown RBP8.22□□□□□ -1.09
USP40-216ENST00000485943 GABRG3Q99928 467 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 FEM1AQ9BSK4 669 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 SNRNP25Q9BV90 132 aaKnown RBP8.22□□□□□ -1.09
USP40-216ENST00000485943 CINPQ9BW66 212 aaPredicted RBP8.22□□□□□ -1.09
USP40-216ENST00000485943 NUSAP1Q9BXS6 441 aaKnown RBP8.22□□□□□ -1.09
USP40-216ENST00000485943 BTBD1Q9H0C5 482 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 GPATCH2LQ9NWQ4 482 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 EBF1Q9UH73 591 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 CLEC4EQ9ULY5 219 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 TTLL3Q9Y4R7 772 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 SPAG17Q6Q759 2223 aa8.22□□□□□ -1.09
USP40-216ENST00000485943 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 LRRD1A4D1F6 860 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 TTC34A8MYJ7 566 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 K7ESF4 209 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 KPNA3O00505 521 aaPredicted RBP8.21□□□□□ -1.1
USP40-216ENST00000485943 IGSF6O95976 241 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 PRNPP04156 253 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 KRT1P04264 644 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 CYP1A2P05177 515 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms