RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 TNKS2Q9H2K2 1166 aa12.1□□□□□ -0.47
HPS4-214ENST00000485842 RCOR3Q9P2K3 495 aaPredicted RBP12.1□□□□□ -0.47
HPS4-214ENST00000485842 CYP8B1Q9UNU6 501 aa12.1□□□□□ -0.47
HPS4-214ENST00000485842 HS3ST2Q9Y278 367 aa12.1□□□□□ -0.47
HPS4-214ENST00000485842 FCF1Q9Y324 198 aaKnown RBP12.1□□□□□ -0.47
HPS4-214ENST00000485842 TARSL2A2RTX5 802 aaKnown RBP12.09□□□□□ -0.47
HPS4-214ENST00000485842 PSTPIP1O43586 416 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 KDELR3O43731 214 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 LILRB5O75023 590 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 CCDC175P0C221 793 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 ACADMP11310 421 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 KDELR1P24390 212 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 SERPINB6P35237 376 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 NBL1P41271 181 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 PSMD8P48556 350 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 MARCKSL1P49006 195 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 PAPOLAP51003 745 aaKnown RBP12.09□□□□□ -0.47
HPS4-214ENST00000485842 DNA2P51530 1060 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 CLCN6P51797 869 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 GEMIN4P57678 1058 aaKnown RBP12.09□□□□□ -0.47
HPS4-214ENST00000485842 SERINC3Q13530 473 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 LPAL2Q16609 132 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 IFI16Q16666 785 aaKnown RBP12.09□□□□□ -0.47
HPS4-214ENST00000485842 USP39Q53GS9 565 aaKnown RBP12.09□□□□□ -0.47
HPS4-214ENST00000485842 ANKRD20A8PQ5CZ79 823 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 C9orf64Q5T6V5 341 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 LRRC38Q5VT99 294 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 ZNF776Q68DI1 518 aaPredicted RBP12.09□□□□□ -0.47
HPS4-214ENST00000485842 ARHGAP12Q8IWW6 846 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 TP53INP2Q8IXH6 220 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 STK40Q8N2I9 435 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 PCDH19Q8TAB3 1148 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 FAM71BQ8TC56 605 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 FRS2Q8WU20 508 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 GAB3Q8WWW8 586 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 PRCCQ92733 491 aaPredicted RBP12.09□□□□□ -0.47
HPS4-214ENST00000485842 PTPRN2Q92932 1015 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 RNF25Q96BH1 459 aaPredicted RBP12.09□□□□□ -0.47
HPS4-214ENST00000485842 SPACA7Q96KW9 195 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 CALR3Q96L12 384 aaKnown RBP12.09□□□□□ -0.47
HPS4-214ENST00000485842 PHOX2BQ99453 314 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 LRRC19Q9H756 370 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 FBRSQ9HAH7 460 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 SP110Q9HB58 689 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 CD93Q9NPY3 652 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 DDX56Q9NY93 547 aaKnown RBP12.09□□□□□ -0.47
HPS4-214ENST00000485842 GUCA1BQ9UMX6 200 aa12.09□□□□□ -0.47
HPS4-214ENST00000485842 GRID2IPA4D2P6 1211 aa12.08□□□□□ -0.48
HPS4-214ENST00000485842 ZSCAN5CA6NGD5 496 aaPredicted RBP12.08□□□□□ -0.48
HPS4-214ENST00000485842 HRO43593 1189 aa12.08□□□□□ -0.48
HPS4-214ENST00000485842 KRT86O43790 486 aa12.08□□□□□ -0.48
HPS4-214ENST00000485842 MFSD11O43934 449 aa12.08□□□□□ -0.48
HPS4-214ENST00000485842 RNASEH1O60930 286 aaKnown RBP12.08□□□□□ -0.48
HPS4-214ENST00000485842 IL4RP24394 825 aa12.08□□□□□ -0.48
HPS4-214ENST00000485842 RECQLP46063 649 aaPredicted RBP12.08□□□□□ -0.48
HPS4-214ENST00000485842 VASPP50552 380 aaPredicted RBP12.08□□□□□ -0.48
HPS4-214ENST00000485842 RPS14P62263 151 aaKnown RBP12.08□□□□□ -0.48
HPS4-214ENST00000485842 SLC20A2Q08357 652 aa12.08□□□□□ -0.48
HPS4-214ENST00000485842 SIM2Q14190 667 aaPredicted RBP12.08□□□□□ -0.48
HPS4-214ENST00000485842 ELAVL3Q14576 367 aaKnown RBP12.08□□□□□ -0.48
HPS4-214ENST00000485842 ARHGAP36Q6ZRI8 547 aa12.08□□□□□ -0.48
HPS4-214ENST00000485842 RFX6Q8HWS3 928 aa12.08□□□□□ -0.48
HPS4-214ENST00000485842 MMAAQ8IVH4 418 aaKnown RBP12.08□□□□□ -0.48
HPS4-214ENST00000485842 FAM160A2Q8N612 972 aaPredicted RBP12.08□□□□□ -0.48
HPS4-214ENST00000485842 LZTR1Q8N653 840 aa12.08□□□□□ -0.48
HPS4-214ENST00000485842 FRMD1Q8N878 549 aa12.08□□□□□ -0.48
HPS4-214ENST00000485842 KIAA1524Q8TCG1 905 aa12.08□□□□□ -0.48
HPS4-214ENST00000485842 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.08□□□□□ -0.48
HPS4-214ENST00000485842 OR8D1Q8WZ84 308 aa12.08□□□□□ -0.48
HPS4-214ENST00000485842 CCDC114Q96M63 670 aa12.08□□□□□ -0.48
HPS4-214ENST00000485842 TM6SF2Q9BZW4 377 aa12.08□□□□□ -0.48
HPS4-214ENST00000485842 TSGA10Q9BZW7 698 aa12.08□□□□□ -0.48
HPS4-214ENST00000485842 RSPH9Q9H1X1 276 aaPredicted RBP12.08□□□□□ -0.48
HPS4-214ENST00000485842 UBA2Q9UBT2 640 aaPredicted RBP12.08□□□□□ -0.48
HPS4-214ENST00000485842 ARIH1Q9Y4X5 557 aaPredicted RBP12.08□□□□□ -0.48
HPS4-214ENST00000485842 PLXND1Q9Y4D7 1925 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 SHROOM3Q8TF72 1996 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 C3orf70A6NLC5 250 aaPredicted RBP12.07□□□□□ -0.48
HPS4-214ENST00000485842 J3KR12 359 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 MAP3K13O43283 966 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 PRAMEF11O60813 436 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 PALMO75781 387 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 TMCC1O94876 653 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 MAP3K6O95382 1288 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 CD160O95971 181 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 IL1BP01584 269 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 DNTTP04053 509 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 BCKDHBP21953 392 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 CNR2P34972 360 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 P2RY2P41231 377 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 RHOAP61586 193 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 DYNLT1P63172 113 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 BYSLQ13895 437 aaKnown RBP12.07□□□□□ -0.48
HPS4-214ENST00000485842 LLGL1Q15334 1064 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 CST6Q15828 149 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 MAP7D1Q3KQU3 841 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 TTC31Q49AM3 519 aaPredicted RBP12.07□□□□□ -0.48
HPS4-214ENST00000485842 AFMIDQ63HM1 303 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 NCBP2-AS2Q69YL0 99 aa12.07□□□□□ -0.48
HPS4-214ENST00000485842 MFSD7Q6UXD7 560 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms