RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 VSIG1Q86XK7 387 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 PCDH20Q8N6Y1 951 aaKnown RBP16.23■□□□□ 0.19
UPF3A-208ENST00000484246 ATP11CQ8NB49 1132 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 CASKIN2Q8WXE0 1202 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 RLN3Q8WXF3 142 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 HSPH1Q92598 858 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 FAM131CQ96AQ9 280 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 CCDC114Q96M63 670 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 FAM129BQ96TA1 746 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 ZNF670Q9BS34 389 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 PCED1AQ9H1Q7 454 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 PABPC3Q9H361 631 aaKnown RBP16.23■□□□□ 0.19
UPF3A-208ENST00000484246 GMEB2Q9UKD1 530 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 HPCAL4Q9UM19 191 aa16.23■□□□□ 0.19
UPF3A-208ENST00000484246 REXO2Q9Y3B8 237 aaKnown RBP16.23■□□□□ 0.19
UPF3A-208ENST00000484246 MCF2LO15068 1137 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 RNASEH1O60930 286 aaKnown RBP16.22■□□□□ 0.19
UPF3A-208ENST00000484246 ZNF821O75541 412 aaPredicted RBP16.22■□□□□ 0.19
UPF3A-208ENST00000484246 ADH1BP00325 375 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 VAV1P15498 845 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 CD6P30203 668 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 SFSWAPQ12872 951 aaKnown RBP16.22■□□□□ 0.19
UPF3A-208ENST00000484246 SERINC3Q13530 473 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 PDK2Q15119 407 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 CST6Q15828 149 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 LINGO4Q6UY18 593 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 Q6ZVU0 165 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 DSG4Q86SJ6 1040 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 CPNE8Q86YQ8 564 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 ARHGAP12Q8IWW6 846 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 NPWQ8N729 165 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 SPC24Q8NBT2 197 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 OR8D1Q8WZ84 308 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 FAF2Q96CS3 445 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 HMCESQ96FZ2 354 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 PDFQ9HBH1 243 aa16.22■□□□□ 0.19
UPF3A-208ENST00000484246 WSB2Q9NYS7 404 aaPredicted RBP16.22■□□□□ 0.19
UPF3A-208ENST00000484246 DOCK4Q8N1I0 1966 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 C10orf142B7Z368 130 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 K7ERQ8 282 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 PJA2O43164 708 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 SMAD6O43541 496 aaKnown RBP16.21■□□□□ 0.19
UPF3A-208ENST00000484246 DNTTP04053 509 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 ACADMP11310 421 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 C5AR1P21730 350 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 IL4RP24394 825 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 VAV2P52735 878 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 MESDQ14696 234 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 INO80DQ53TQ3 878 aaPredicted RBP16.21■□□□□ 0.19
UPF3A-208ENST00000484246 PEAR1Q5VY43 1037 aaPredicted RBP16.21■□□□□ 0.19
UPF3A-208ENST00000484246 C11orf63Q6NUN7 778 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 LPCAT2Q7L5N7 544 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 STK40Q8N2I9 435 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 OR2A12Q8NGT7 310 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 CD93Q9NPY3 652 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 PPM1HQ9ULR3 514 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 FZD4Q9ULV1 537 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 CYP8B1Q9UNU6 501 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 PLXND1Q9Y4D7 1925 aa16.21■□□□□ 0.19
UPF3A-208ENST00000484246 OTOGLQ3ZCN5 2332 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 MYO18AQ92614 2054 aaKnown RBP16.2■□□□□ 0.18
UPF3A-208ENST00000484246 ATG2BQ96BY7 2078 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 MYO15AQ9UKN7 3530 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 ARHGAP42A6NI28 874 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 DAPK3O43293 454 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 BUB1BO60566 1050 aaPredicted RBP16.2■□□□□ 0.18
UPF3A-208ENST00000484246 PRAMEF11O60813 436 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 SERPINB6P35237 376 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 HOXD12P35452 270 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 DPP6P42658 865 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 NUMBP49757 651 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 CDH6P55285 790 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 DPYSL3Q14195 570 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 KRT81Q14533 505 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 ACCSLQ4AC99 568 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 TMCO3Q6UWJ1 677 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 MAP7D3Q8IWC1 876 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 FRMD1Q8N878 549 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 CADM4Q8NFZ8 388 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 ERLEC1Q96DZ1 483 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 GRPEL1Q9HAV7 217 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 NCDNQ9UBB6 729 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 INVSQ9Y283 1065 aa16.2■□□□□ 0.18
UPF3A-208ENST00000484246 BCLAF3A2AJT9 711 aaKnown RBP16.19■□□□□ 0.18
UPF3A-208ENST00000484246 RCCD1A6NED2 376 aa16.19■□□□□ 0.18
UPF3A-208ENST00000484246 C1QTNF3-AMACRE9PGA6 284 aa16.19■□□□□ 0.18
UPF3A-208ENST00000484246 SLC7A4O43246 635 aa16.19■□□□□ 0.18
UPF3A-208ENST00000484246 GSRP00390 522 aa16.19■□□□□ 0.18
UPF3A-208ENST00000484246 TGM1P22735 817 aa16.19■□□□□ 0.18
UPF3A-208ENST00000484246 SSR1P43307 286 aaKnown RBP16.19■□□□□ 0.18
UPF3A-208ENST00000484246 LPAL2Q16609 132 aa16.19■□□□□ 0.18
UPF3A-208ENST00000484246 PLA2G2CQ5R387 149 aa16.19■□□□□ 0.18
UPF3A-208ENST00000484246 FAM46CQ5VWP2 391 aa16.19■□□□□ 0.18
UPF3A-208ENST00000484246 MMAAQ8IVH4 418 aaKnown RBP16.19■□□□□ 0.18
UPF3A-208ENST00000484246 TXLNBQ8N3L3 684 aa16.19■□□□□ 0.18
UPF3A-208ENST00000484246 GPR161Q8N6U8 529 aaKnown RBP16.19■□□□□ 0.18
UPF3A-208ENST00000484246 CCDC112Q8NEF3 446 aa16.19■□□□□ 0.18
UPF3A-208ENST00000484246 TMIEQ8NEW7 156 aa16.19■□□□□ 0.18
UPF3A-208ENST00000484246 FOXJ1Q92949 421 aa16.19■□□□□ 0.18
UPF3A-208ENST00000484246 TOE1Q96GM8 510 aaKnown RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms