RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 NDFIP2Q9NV92 336 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 HES2Q9Y543 173 aa13.73□□□□□ -0.21
USP42-206ENST00000479544 MYH3P11055 1940 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 A0A0A0MRY4 1105 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 TRIM43BA6NCK2 446 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 TRIM38O00635 465 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 MAFGO15525 162 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 NRP2O60462 931 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 TRAF7Q6Q0C0 670 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 MICALL2Q8IY33 904 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 RP9Q8TA86 221 aaKnown RBP13.72□□□□□ -0.21
USP42-206ENST00000479544 SPATA13Q96N96 652 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 AGAP2Q99490 1192 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 ITGAXP20702 1163 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 ALDH4A1P30038 563 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 ADSLP30566 484 aaPredicted RBP13.72□□□□□ -0.21
USP42-206ENST00000479544 CCR10P46092 362 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 BNIP3Q12983 259 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 RSBN1Q5VWQ0 802 aaPredicted RBP13.72□□□□□ -0.21
USP42-206ENST00000479544 GALNT18Q6P9A2 607 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 C4orf22Q6V702 233 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 PDSS2Q86YH6 399 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 SAMD3Q8N6K7 520 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 PHC3Q8NDX5 983 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 ADCY4Q8NFM4 1077 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 TNIP2Q8NFZ5 429 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 FBXO30Q8TB52 745 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 OTUD5Q96G74 571 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 PGLYRP2Q96PD5 576 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 PKP2Q99959 881 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 CD274Q9NZQ7 290 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 BTRCQ9Y297 605 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 SPEF2Q9C093 1822 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 PEX10O60683 326 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 RAP1GDS1P52306 607 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 GNA12Q03113 381 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 P3H2Q8IVL5 708 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 SYTL1Q8IYJ3 562 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 PYROXD2Q8N2H3 581 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 DLG3Q92796 817 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 WDCPQ9H6R7 721 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 ALG9Q9H6U8 611 aa13.72□□□□□ -0.21
USP42-206ENST00000479544 BARX2Q9UMQ3 279 aaPredicted RBP13.72□□□□□ -0.21
USP42-206ENST00000479544 NEMP2A6NFY4 417 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 SLCO1B7G3V0H7 640 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 TPD52L2O43399 206 aaKnown RBP13.71□□□□□ -0.21
USP42-206ENST00000479544 TADA2AO75478 443 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 ATXN8OSP0DMR3 200 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 STT3AP46977 705 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 HPCAP84074 193 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 AASDHQ4L235 1098 aaPredicted RBP13.71□□□□□ -0.21
USP42-206ENST00000479544 C6orf183Q5T699 404 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 IL23RQ5VWK5 629 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 CROCCP3Q8IVE0 287 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 C12orf56Q8IXR9 622 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 PTCD3Q96EY7 689 aaKnown RBP13.71□□□□□ -0.21
USP42-206ENST00000479544 NSMCE2Q96MF7 247 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 RTKNQ9BST9 563 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 ATAD3AQ9NVI7 634 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 STK39Q9UEW8 545 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 RGPD3A6NKT7 1758 aaPredicted RBP13.71□□□□□ -0.21
USP42-206ENST00000479544 RGPD4Q7Z3J3 1758 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 HS6ST1O60243 411 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 IL18RAPO95256 599 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 MAP3K7CLP57077 242 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 CA9Q16790 459 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 TAF2Q6P1X5 1199 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 PSMA8Q8TAA3 256 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 SLC2A14Q8TDB8 520 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 OSBPL11Q9BXB4 747 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 MYOZ2Q9NPC6 264 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 CHRAC1Q9NRG0 131 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 LMCD1Q9NZU5 365 aa13.71□□□□□ -0.21
USP42-206ENST00000479544 KPNA4O00629 521 aaPredicted RBP13.71□□□□□ -0.22
USP42-206ENST00000479544 RGL2O15211 777 aa13.71□□□□□ -0.22
USP42-206ENST00000479544 LTFP02788 710 aa13.71□□□□□ -0.22
USP42-206ENST00000479544 CAPSQ13938 189 aa13.71□□□□□ -0.22
USP42-206ENST00000479544 TLR1Q15399 786 aa13.71□□□□□ -0.22
USP42-206ENST00000479544 TMEM63BQ5T3F8 832 aa13.71□□□□□ -0.22
USP42-206ENST00000479544 DCBLD1Q8N8Z6 715 aa13.71□□□□□ -0.22
USP42-206ENST00000479544 HTRA1Q92743 480 aa13.71□□□□□ -0.22
USP42-206ENST00000479544 P2RY11Q96G91 374 aa13.71□□□□□ -0.22
USP42-206ENST00000479544 BTBD9Q96Q07 612 aa13.71□□□□□ -0.22
USP42-206ENST00000479544 SLC25A23Q9BV35 468 aa13.71□□□□□ -0.22
USP42-206ENST00000479544 MAGEB5Q9BZ81 275 aa13.71□□□□□ -0.22
USP42-206ENST00000479544 RAP2CQ9Y3L5 183 aa13.71□□□□□ -0.22
USP42-206ENST00000479544 FADS3Q9Y5Q0 445 aa13.71□□□□□ -0.22
USP42-206ENST00000479544 RAD54BQ9Y620 910 aa13.71□□□□□ -0.22
USP42-206ENST00000479544 U3KQV3 271 aa13.71□□□□□ -0.22
USP42-206ENST00000479544 BTAF1O14981 1849 aa13.71□□□□□ -0.22
USP42-206ENST00000479544 FAM95CA0A1B0GW59 222 aa13.7□□□□□ -0.22
USP42-206ENST00000479544 SLC15A5A6NIM6 579 aa13.7□□□□□ -0.22
USP42-206ENST00000479544 SNRPB2P08579 225 aaKnown RBP13.7□□□□□ -0.22
USP42-206ENST00000479544 CHRM3P20309 590 aa13.7□□□□□ -0.22
USP42-206ENST00000479544 SLC6A3Q01959 620 aa13.7□□□□□ -0.22
USP42-206ENST00000479544 ATP6AP1LQ52LC2 224 aa13.7□□□□□ -0.22
USP42-206ENST00000479544 BTBD8Q5XKL5 378 aa13.7□□□□□ -0.22
USP42-206ENST00000479544 TATDN1Q6P1N9 297 aa13.7□□□□□ -0.22
USP42-206ENST00000479544 MILR1Q7Z6M3 343 aa13.7□□□□□ -0.22
USP42-206ENST00000479544 REXO4Q9GZR2 422 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms