RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 SLITRK4Q8IW52 837 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 PHACTR4Q8IZ21 702 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 FUKQ8N0W3 1084 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 DENND6BQ8NEG7 585 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 ZMIZ2Q8NF64 920 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 SPATA3Q8NHX4 192 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 FIBINQ8TAL6 211 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 SEC14L1Q92503 715 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 RNF34Q969K3 372 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 SYAP1Q96A49 352 aaPredicted RBP8.28□□□□□ -1.08
USP54-211ENST00000474929 CCDC114Q96M63 670 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 SMOQ99835 787 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 DDX50Q9BQ39 737 aaKnown RBP8.28□□□□□ -1.08
USP54-211ENST00000474929 ZPBPQ9BS86 351 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 NMUR1Q9HB89 426 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 ZSWIM6Q9HCJ5 1215 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 PDE11AQ9HCR9 933 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 SLAMF7Q9NQ25 335 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 GULP1Q9UBP9 304 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 NUDT5Q9UKK9 219 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 FARP1Q9Y4F1 1045 aaPredicted RBP8.28□□□□□ -1.08
USP54-211ENST00000474929 PCDHGA9Q9Y5G4 932 aaKnown RBP8.28□□□□□ -1.08
USP54-211ENST00000474929 CYP46A1Q9Y6A2 500 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 OAS3Q9Y6K5 1087 aaKnown RBP8.28□□□□□ -1.08
USP54-211ENST00000474929 RNF215Q9Y6U7 377 aa8.28□□□□□ -1.08
USP54-211ENST00000474929 FAM221AA4D161 298 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 VWA3AA6NCI4 1184 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 TTC34A8MYJ7 566 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 TISP43B9A030 160 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 BHMG1C9JSJ3 638 aaPredicted RBP8.27□□□□□ -1.09
USP54-211ENST00000474929 P4HA1P13674 534 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 IDEP14735 1019 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 GLB1P16278 677 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 SSTR2P30874 369 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 THOP1P52888 689 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 ADKP55263 362 aaKnown RBP8.27□□□□□ -1.09
USP54-211ENST00000474929 CNTN1Q12860 1018 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 ALCAMQ13740 583 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 ZRSR2Q15696 482 aaKnown RBP8.27□□□□□ -1.09
USP54-211ENST00000474929 DCAF12Q5T6F0 453 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 OR6B2Q6IFH4 312 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 C16orf46Q6P387 395 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 CDH24Q86UP0 819 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 GPBP1Q86WP2 473 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 GKN2Q86XP6 184 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 KYQ8NBH2 561 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 HJURPQ8NCD3 748 aaPredicted RBP8.27□□□□□ -1.09
USP54-211ENST00000474929 AGBL5Q8NDL9 886 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 SAAL1Q96ER3 474 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 LRRC61Q9BV99 259 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 ZHX3Q9H4I2 956 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 CHST11Q9NPF2 352 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 FZD3Q9NPG1 666 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 PCDHB13Q9Y5F0 798 aa8.27□□□□□ -1.09
USP54-211ENST00000474929 KLF2Q9Y5W3 355 aaPredicted RBP8.27□□□□□ -1.09
USP54-211ENST00000474929 PRRC2CQ9Y520 2896 aaKnown RBP8.26□□□□□ -1.09
USP54-211ENST00000474929 TMEM200CA6NKL6 621 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 YY2O15391 372 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 DPM1O60762 260 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 TBL1XO60907 577 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 LUC7L3O95232 432 aaKnown RBP8.26□□□□□ -1.09
USP54-211ENST00000474929 CPNE6O95741 557 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 ZNF18P17022 549 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 CLCN1P35523 988 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 DDIT3P35638 169 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 SLC11A2P49281 568 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 VASPP50552 380 aaPredicted RBP8.26□□□□□ -1.09
USP54-211ENST00000474929 KIF11P52732 1056 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 WNT7BP56706 349 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 CLDN2P57739 230 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 RPS21P63220 83 aaKnown RBP8.26□□□□□ -1.09
USP54-211ENST00000474929 TRPC3Q13507 836 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 SLC12A1Q13621 1099 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 ZRSR1Q15695 479 aaKnown RBP8.26□□□□□ -1.09
USP54-211ENST00000474929 PITRM1Q5JRX3 1037 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 DTHD1Q6ZMT9 781 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 PAQR9Q6ZVX9 377 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 TRAPPC11Q7Z392 1133 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 KDELC2Q7Z4H8 507 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 SPRED1Q7Z699 444 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 PIM3Q86V86 326 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 GPD1LQ8N335 351 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 SLC2A14Q8TDB8 520 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 KCTD13Q8WZ19 329 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 CENPTQ96BT3 561 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 PPP1R16AQ96I34 528 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 NOX5Q96PH1 765 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 ACCSQ96QU6 501 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 PPP1R9BQ96SB3 815 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 FIZ1Q96SL8 496 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 DPYSL5Q9BPU6 564 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 KIAA1586Q9HCI6 787 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 FAM13BQ9NYF5 915 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 PILRAQ9UKJ1 303 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 KIF3AQ9Y496 699 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 NME7Q9Y5B8 376 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 UNC13CQ8NB66 2214 aa8.26□□□□□ -1.09
USP54-211ENST00000474929 FRMD3A2A2Y4 597 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 ANKUB1A6NFN9 424 aa8.25□□□□□ -1.09
USP54-211ENST00000474929 ZNF233A6NK53 670 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms