RNA–Protein interactions for RNA: ENST00000473924.1

DDX56-209, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-209ENST00000473924 FBRSQ9HAH7 460 aa12.68□□□□□ -0.38
DDX56-209ENST00000473924 PRDM16Q9HAZ2 1276 aa12.68□□□□□ -0.38
DDX56-209ENST00000473924 CD248Q9HCU0 757 aa12.68□□□□□ -0.38
DDX56-209ENST00000473924 PRSS16Q9NQE7 514 aa12.68□□□□□ -0.38
DDX56-209ENST00000473924 FAM86C1Q9NVL1 165 aa12.68□□□□□ -0.38
DDX56-209ENST00000473924 FARP1Q9Y4F1 1045 aaPredicted RBP12.68□□□□□ -0.38
DDX56-209ENST00000473924 GRID2IPA4D2P6 1211 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 K7ERQ8 282 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 SMAD6O43541 496 aaKnown RBP12.67□□□□□ -0.38
DDX56-209ENST00000473924 PALMO75781 387 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 ZMPSTE24O75844 475 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 CNR2P34972 360 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 RECQLP46063 649 aaPredicted RBP12.67□□□□□ -0.38
DDX56-209ENST00000473924 SERPINH1P50454 418 aaKnown RBP12.67□□□□□ -0.38
DDX56-209ENST00000473924 DNA2P51530 1060 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 COPAP53621 1224 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 BYSLQ13895 437 aaKnown RBP12.67□□□□□ -0.38
DDX56-209ENST00000473924 C9orf64Q5T6V5 341 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 ZNF776Q68DI1 518 aaPredicted RBP12.67□□□□□ -0.38
DDX56-209ENST00000473924 Q6ZVU0 165 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 PEX26Q7Z412 305 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 CCDC50Q8IVM0 306 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 RNF10Q8N5U6 811 aaKnown RBP12.67□□□□□ -0.38
DDX56-209ENST00000473924 NETO2Q8NC67 525 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 PCDH19Q8TAB3 1148 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 FRS2Q8WU20 508 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 PTPRN2Q92932 1015 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 SIPA1Q96FS4 1042 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 PDLIM2Q96JY6 352 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 MKRN2Q9H000 416 aaKnown RBP12.67□□□□□ -0.38
DDX56-209ENST00000473924 KLC2Q9H0B6 622 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 SLC6A17Q9H1V8 727 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 SP110Q9HB58 689 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 LZTFL1Q9NQ48 299 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 ETNK2Q9NVF9 386 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 AMFRQ9UKV5 643 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 MFHAS1Q9Y4C4 1052 aa12.67□□□□□ -0.38
DDX56-209ENST00000473924 ARIH1Q9Y4X5 557 aaPredicted RBP12.67□□□□□ -0.38
DDX56-209ENST00000473924 CXorf51AA0A1B0GTR3 108 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 CCDC66A2RUB6 948 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 ZNF217O75362 1048 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 RPP40O75818 363 aaKnown RBP12.66□□□□□ -0.38
DDX56-209ENST00000473924 ZRANB2O95218 330 aaKnown RBP eCLIP12.66□□□□□ -0.38
DDX56-209ENST00000473924 DNTTP04053 509 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 VAV1P15498 845 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 ELAVL3Q14576 367 aaKnown RBP12.66□□□□□ -0.38
DDX56-209ENST00000473924 AFMIDQ63HM1 303 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 C22orf39Q6P5X5 142 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 CEP68Q76N32 757 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 DSG4Q86SJ6 1040 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 METTL3Q86U44 580 aaKnown RBP12.66□□□□□ -0.38
DDX56-209ENST00000473924 VSIG1Q86XK7 387 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 RFX6Q8HWS3 928 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 ARHGAP12Q8IWW6 846 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 STK40Q8N2I9 435 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 LRRC57Q8N9N7 239 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 CASKIN2Q8WXE0 1202 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 OR8D1Q8WZ84 308 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 FAF2Q96CS3 445 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 RBM41Q96IZ5 413 aaKnown RBP12.66□□□□□ -0.38
DDX56-209ENST00000473924 SPACA7Q96KW9 195 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 ZNF830Q96NB3 372 aaPredicted RBP12.66□□□□□ -0.38
DDX56-209ENST00000473924 RNF157Q96PX1 679 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 CEP44Q9C0F1 390 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 TNKS2Q9H2K2 1166 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 UBA2Q9UBT2 640 aaPredicted RBP12.66□□□□□ -0.38
DDX56-209ENST00000473924 INVSQ9Y283 1065 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 PPP2R2CQ9Y2T4 447 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 FCF1Q9Y324 198 aaKnown RBP12.66□□□□□ -0.38
DDX56-209ENST00000473924 ACTL7AQ9Y615 435 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 CKAP5Q14008 2032 aa12.66□□□□□ -0.38
DDX56-209ENST00000473924 CHD5Q8TDI0 1954 aa12.65□□□□□ -0.38
DDX56-209ENST00000473924 C3orf70A6NLC5 250 aaPredicted RBP12.65□□□□□ -0.38
DDX56-209ENST00000473924 ZNF487B1APH4 448 aa12.65□□□□□ -0.38
DDX56-209ENST00000473924 J3KR12 359 aa12.65□□□□□ -0.38
DDX56-209ENST00000473924 PRAMEF11O60813 436 aa12.65□□□□□ -0.38
DDX56-209ENST00000473924 IL1BP01584 269 aa12.65□□□□□ -0.38
DDX56-209ENST00000473924 ZFXP17010 805 aaPredicted RBP12.65□□□□□ -0.38
DDX56-209ENST00000473924 CTNNA1P35221 906 aaKnown RBP12.65□□□□□ -0.38
DDX56-209ENST00000473924 MARCKSL1P49006 195 aa12.65□□□□□ -0.38
DDX56-209ENST00000473924 RPS14P62263 151 aaKnown RBP12.65□□□□□ -0.38
DDX56-209ENST00000473924 CCDC173Q0VFZ6 552 aa12.65□□□□□ -0.38
DDX56-209ENST00000473924 SRSF5Q13243 272 aaKnown RBP12.65□□□□□ -0.38
DDX56-209ENST00000473924 SIM2Q14190 667 aaPredicted RBP12.65□□□□□ -0.38
DDX56-209ENST00000473924 PAFAH1B3Q15102 231 aaKnown RBP12.65□□□□□ -0.38
DDX56-209ENST00000473924 TTC31Q49AM3 519 aaPredicted RBP12.65□□□□□ -0.38
DDX56-209ENST00000473924 INO80DQ53TQ3 878 aaPredicted RBP12.65□□□□□ -0.38
DDX56-209ENST00000473924 KAZNQ674X7 775 aa12.65□□□□□ -0.38
DDX56-209ENST00000473924 NCBP2-AS2Q69YL0 99 aa12.65□□□□□ -0.38
DDX56-209ENST00000473924 MFSD7Q6UXD7 560 aa12.65□□□□□ -0.38
DDX56-209ENST00000473924 PRR23BQ6ZRT6 265 aa12.65□□□□□ -0.38
DDX56-209ENST00000473924 MMAAQ8IVH4 418 aaKnown RBP12.65□□□□□ -0.38
DDX56-209ENST00000473924 KATNAL2Q8IYT4 538 aa12.65□□□□□ -0.38
DDX56-209ENST00000473924 RCOR2Q8IZ40 523 aa12.65□□□□□ -0.38
DDX56-209ENST00000473924 RYBPQ8N488 228 aaPredicted RBP12.65□□□□□ -0.38
DDX56-209ENST00000473924 ATPAF2Q8N5M1 289 aa12.65□□□□□ -0.38
DDX56-209ENST00000473924 PCDH20Q8N6Y1 951 aaKnown RBP12.65□□□□□ -0.38
DDX56-209ENST00000473924 UBL4BQ8N7F7 174 aa12.65□□□□□ -0.38
DDX56-209ENST00000473924 GANCQ8TET4 914 aa12.65□□□□□ -0.38
DDX56-209ENST00000473924 GAB3Q8WWW8 586 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms