RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 SETD4Q9NVD3 440 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 ADA2Q9NZK5 511 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 SEPT10Q9P0V9 454 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 AAR2Q9Y312 384 aaKnown RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 COL11A1P12107 1806 aaPredicted RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 ANK1P16157 1881 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 UNCXA6NJT0 531 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 TNPO2O14787 897 aaKnown RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 TRPA1O75762 1119 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 ESRRBO95718 433 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 ERVK-10P10266 1014 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 ATP6V1B1P15313 513 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 TFEBP19484 476 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 PSMB4P28070 264 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 GRIA4P48058 902 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 PSME3P61289 254 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 NAA20P61599 178 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 GALNT1Q10472 559 aaPredicted RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 USP4Q13107 963 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 USP10Q14694 798 aaKnown RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 PPP1R26Q5T8A7 1209 aaPredicted RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 OLFML2BQ68BL8 750 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 TRNP1Q6NT89 227 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 PMF1Q6P1K2 205 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 RNF111Q6ZNA4 994 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 CAMK1DQ8IU85 385 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 LRRC71Q8N4P6 559 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 CALML6Q8TD86 181 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 STYXQ8WUJ0 223 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.22□□□□□ -1.41
HERC4-209ENST00000473533 MRPL57Q9BQC6 102 aaKnown RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 SLC2A11Q9BYW1 496 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 RHOBTB2Q9BYZ6 727 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 GBA3Q9H227 469 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 ZNF385DQ9H6B1 395 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 PALMDQ9NP74 551 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 PFDN4Q9NQP4 134 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 HMGXB4Q9UGU5 601 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 ZNHIT2Q9UHR6 403 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 FAM155AB1AL88 458 aaPredicted RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 XPO1O14980 1071 aaKnown RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 HNRNPRO43390 633 aaKnown RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 APBA3O96018 575 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 F9P00740 461 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 PFKMP08237 780 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 CDH2P19022 906 aaPredicted RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 IL10P22301 178 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 ALDH3B2P48448 385 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 ERFP50548 548 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 PSMD7P51665 324 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 TKTL1P51854 596 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 MYBPC1Q00872 1141 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 CXCL9Q07325 125 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 BNIP2Q12982 314 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 MYLK3Q32MK0 819 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 FAM45BPQ6NSW5 357 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 ZNF354CQ86Y25 554 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 CHERPQ8IWX8 916 aaKnown RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 CRYBG2Q8N1P7 616 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 OR6B3Q8NGW1 331 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 ZFP28Q8NHY6 868 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 FAM45AQ8TCE6 357 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 RSPH1Q8WYR4 309 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 SPATA33Q96N06 139 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 UHRF1Q96T88 793 aaPredicted RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 MMP19Q99542 508 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 PRKD2Q9BZL6 878 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 SHCBP1LQ9BZQ2 653 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 MRPL46Q9H2W6 279 aaKnown RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 QTRT2Q9H974 415 aaKnown RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 PREBQ9HCU5 417 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 CD320Q9NPF0 282 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 DNAAF2Q9NVR5 837 aaKnown RBP6.22□□□□□ -1.41
HERC4-209ENST00000473533 APPL1Q9UKG1 709 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 SARDHQ9UL12 918 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 USP3Q9Y6I4 520 aa6.22□□□□□ -1.41
HERC4-209ENST00000473533 ANXA9O76027 345 aa6.21□□□□□ -1.41
HERC4-209ENST00000473533 RBP1P09455 135 aa6.21□□□□□ -1.41
HERC4-209ENST00000473533 STMN1P16949 149 aa6.21□□□□□ -1.41
HERC4-209ENST00000473533 HOXB8P17481 243 aaPredicted RBP6.21□□□□□ -1.41
HERC4-209ENST00000473533 XRCC1P18887 633 aaPredicted RBP6.21□□□□□ -1.41
HERC4-209ENST00000473533 ATP5F1P24539 256 aaPredicted RBP6.21□□□□□ -1.41
HERC4-209ENST00000473533 HTR7P34969 479 aa6.21□□□□□ -1.41
HERC4-209ENST00000473533 MLH1P40692 756 aa6.21□□□□□ -1.41
HERC4-209ENST00000473533 SLC10A2Q12908 348 aaPredicted RBP6.21□□□□□ -1.41
HERC4-209ENST00000473533 ORC1Q13415 861 aa6.21□□□□□ -1.41
HERC4-209ENST00000473533 TMED1Q13445 227 aa6.21□□□□□ -1.41
HERC4-209ENST00000473533 TTLL12Q14166 644 aaPredicted RBP6.21□□□□□ -1.41
HERC4-209ENST00000473533 TTLL4Q14679 1199 aa6.21□□□□□ -1.41
HERC4-209ENST00000473533 PPP2R5DQ14738 602 aa6.21□□□□□ -1.41
HERC4-209ENST00000473533 VWA5B1Q5TIE3 1220 aa6.21□□□□□ -1.41
HERC4-209ENST00000473533 MAP1SQ66K74 1059 aaPredicted RBP6.21□□□□□ -1.41
HERC4-209ENST00000473533 IYDQ6PHW0 289 aa6.21□□□□□ -1.41
HERC4-209ENST00000473533 KIAA0408Q6ZU52 694 aa6.21□□□□□ -1.41
HERC4-209ENST00000473533 SCUBE3Q8IX30 993 aa6.21□□□□□ -1.41
HERC4-209ENST00000473533 ZNF567Q8N184 647 aa6.21□□□□□ -1.41
HERC4-209ENST00000473533 ANKFN1Q8N957 763 aa6.21□□□□□ -1.41
HERC4-209ENST00000473533 LEMD2Q8NC56 503 aa6.21□□□□□ -1.41
HERC4-209ENST00000473533 PPHLN1Q8NEY8 458 aaKnown RBP6.21□□□□□ -1.41
HERC4-209ENST00000473533 ZNF526Q8TF50 670 aaPredicted RBP6.21□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms