RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 DAB1O75553 588 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 THEGLP0DJG4 465 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 GLDCP23378 1020 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 DGKAP23743 735 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 CHRNA3P32297 505 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 ZNF284Q2VY69 593 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 PTPN20Q4JDL3 420 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 ALFQ53S48 1182 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 NEK5Q6P3R8 708 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 GBP6Q6ZN66 633 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 LRRC69Q6ZNQ3 347 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 ZNF683Q8IZ20 524 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 ATP11CQ8NB49 1132 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 TMIEQ8NEW7 156 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 ZNF397Q8NF99 534 aaPredicted RBP23.18■■□□□ 1.3
USP4-208ENST00000464168 SNIP1Q8TAD8 396 aaKnown RBP23.18■■□□□ 1.3
USP4-208ENST00000464168 ARRDC3Q96B67 414 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 NOX5Q96PH1 765 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 KLHL11Q9NVR0 708 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 UCKL1Q9NWZ5 548 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 ARHGEF38Q9NXL2 777 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 VPS51Q9UID3 782 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 CLCA2Q9UQC9 943 aa23.18■■□□□ 1.3
USP4-208ENST00000464168 FARP1Q9Y4F1 1045 aaPredicted RBP23.18■■□□□ 1.3
USP4-208ENST00000464168 RNF103O00237 685 aa23.17■■□□□ 1.3
USP4-208ENST00000464168 KPNA3O00505 521 aaPredicted RBP23.17■■□□□ 1.3
USP4-208ENST00000464168 RRP8O43159 456 aaKnown RBP23.17■■□□□ 1.3
USP4-208ENST00000464168 SMAD6O43541 496 aaKnown RBP23.17■■□□□ 1.3
USP4-208ENST00000464168 GADD45BO75293 160 aaPredicted RBP23.17■■□□□ 1.3
USP4-208ENST00000464168 TFE3P19532 575 aaPredicted RBP23.17■■□□□ 1.3
USP4-208ENST00000464168 PON1P27169 355 aa23.17■■□□□ 1.3
USP4-208ENST00000464168 CXCR3P49682 368 aa23.17■■□□□ 1.3
USP4-208ENST00000464168 KRT83P78385 493 aa23.17■■□□□ 1.3
USP4-208ENST00000464168 PTK2Q05397 1052 aa23.17■■□□□ 1.3
USP4-208ENST00000464168 KCNMA1Q12791 1236 aa23.17■■□□□ 1.3
USP4-208ENST00000464168 EXOC3L4Q17RC7 722 aa23.17■■□□□ 1.3
USP4-208ENST00000464168 HORMAD1Q86X24 394 aa23.17■■□□□ 1.3
USP4-208ENST00000464168 CREBRFQ8IUR6 639 aa23.17■■□□□ 1.3
USP4-208ENST00000464168 FGF11Q92914 225 aa23.17■■□□□ 1.3
USP4-208ENST00000464168 NPY6RQ99463 290 aa23.17■■□□□ 1.3
USP4-208ENST00000464168 C2orf49Q9BVC5 232 aaPredicted RBP23.17■■□□□ 1.3
USP4-208ENST00000464168 TKTL2Q9H0I9 626 aa23.17■■□□□ 1.3
USP4-208ENST00000464168 WDCPQ9H6R7 721 aa23.17■■□□□ 1.3
USP4-208ENST00000464168 CAAP1Q9H8G2 361 aa23.17■■□□□ 1.3
USP4-208ENST00000464168 AJAP1Q9UKB5 411 aaPredicted RBP23.17■■□□□ 1.3
USP4-208ENST00000464168 SNX10Q9Y5X0 201 aa23.17■■□□□ 1.3
USP4-208ENST00000464168 BRINP1O60477 761 aa23.16■■□□□ 1.3
USP4-208ENST00000464168 RHOCP08134 193 aa23.16■■□□□ 1.3
USP4-208ENST00000464168 RRM1P23921 792 aa23.16■■□□□ 1.3
USP4-208ENST00000464168 CLCN1P35523 988 aa23.16■■□□□ 1.3
USP4-208ENST00000464168 KRT9P35527 623 aa23.16■■□□□ 1.3
USP4-208ENST00000464168 SNX16P57768 344 aa23.16■■□□□ 1.3
USP4-208ENST00000464168 E2F1Q01094 437 aa23.16■■□□□ 1.3
USP4-208ENST00000464168 IRF2BP1Q8IU81 584 aa23.16■■□□□ 1.3
USP4-208ENST00000464168 CHST14Q8NCH0 376 aa23.16■■□□□ 1.3
USP4-208ENST00000464168 OR4C6Q8NH72 309 aa23.16■■□□□ 1.3
USP4-208ENST00000464168 SIX2Q9NPC8 291 aa23.16■■□□□ 1.3
USP4-208ENST00000464168 FZD3Q9NPG1 666 aa23.16■■□□□ 1.3
USP4-208ENST00000464168 RRN3Q9NYV6 651 aa23.16■■□□□ 1.3
USP4-208ENST00000464168 RWDD2AQ9UIY3 292 aa23.16■■□□□ 1.3
USP4-208ENST00000464168 ZFR2Q9UPR6 939 aaKnown RBP23.16■■□□□ 1.3
USP4-208ENST00000464168 A0A0D9SEW6 157 aa23.15■■□□□ 1.3
USP4-208ENST00000464168 GTPBP10A4D1E9 387 aaKnown RBP23.15■■□□□ 1.3
USP4-208ENST00000464168 DRGXA6NNA5 263 aa23.15■■□□□ 1.3
USP4-208ENST00000464168 FOXN3O00409 490 aaPredicted RBP23.15■■□□□ 1.3
USP4-208ENST00000464168 PRB1P04280 392 aa23.15■■□□□ 1.3
USP4-208ENST00000464168 GIMD1P0DJR0 217 aa23.15■■□□□ 1.3
USP4-208ENST00000464168 CCDC15Q0P6D6 951 aa23.15■■□□□ 1.3
USP4-208ENST00000464168 BRMS1LQ5PSV4 323 aa23.15■■□□□ 1.3
USP4-208ENST00000464168 SMYD5Q6GMV2 418 aa23.15■■□□□ 1.3
USP4-208ENST00000464168 LINGO4Q6UY18 593 aa23.15■■□□□ 1.3
USP4-208ENST00000464168 SETD3Q86TU7 594 aaPredicted RBP23.15■■□□□ 1.3
USP4-208ENST00000464168 SLC47A2Q86VL8 602 aa23.15■■□□□ 1.3
USP4-208ENST00000464168 OR13H1Q8NG92 308 aa23.15■■□□□ 1.3
USP4-208ENST00000464168 BAP1Q92560 729 aa23.15■■□□□ 1.3
USP4-208ENST00000464168 NT5C3BQ969T7 300 aa23.15■■□□□ 1.3
USP4-208ENST00000464168 CCDC114Q96M63 670 aa23.15■■□□□ 1.3
USP4-208ENST00000464168 SYNCQ9H7C4 482 aa23.15■■□□□ 1.3
USP4-208ENST00000464168 PLCB1Q9NQ66 1216 aa23.15■■□□□ 1.3
USP4-208ENST00000464168 MT-CO3P00414 261 aa23.14■■□□□ 1.29
USP4-208ENST00000464168 PRNPP04156 253 aa23.14■■□□□ 1.29
USP4-208ENST00000464168 AKT2P31751 481 aa23.14■■□□□ 1.29
USP4-208ENST00000464168 RNASE9P60153 205 aaKnown RBP23.14■■□□□ 1.29
USP4-208ENST00000464168 ARTNQ5T4W7 220 aa23.14■■□□□ 1.29
USP4-208ENST00000464168 ERN2Q76MJ5 926 aaKnown RBP23.14■■□□□ 1.29
USP4-208ENST00000464168 ZDHHC17Q8IUH5 632 aa23.14■■□□□ 1.29
USP4-208ENST00000464168 DCAF4L2Q8NA75 395 aa23.14■■□□□ 1.29
USP4-208ENST00000464168 PGAP3Q96FM1 320 aaPredicted RBP23.14■■□□□ 1.29
USP4-208ENST00000464168 HDAC8Q9BY41 377 aa23.14■■□□□ 1.29
USP4-208ENST00000464168 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP23.14■■□□□ 1.29
USP4-208ENST00000464168 MPP6Q9NZW5 540 aa23.14■■□□□ 1.29
USP4-208ENST00000464168 FFAR2O15552 330 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 PIAS2O75928 621 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 PNMA6AP0CW24 399 aaPredicted RBP23.13■■□□□ 1.29
USP4-208ENST00000464168 HNRNPA2B1P22626 353 aaKnown RBP23.13■■□□□ 1.29
USP4-208ENST00000464168 CLCN6P51797 869 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 CLDN2P57739 230 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 DAB2P98082 770 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 BECN1Q14457 450 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 ARSIQ5FYB1 569 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms