RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 SFSWAPQ12872 951 aaKnown RBP20.21■□□□□ 0.83
COL9A3-204ENST00000463487 MMRN1Q13201 1228 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 ELAVL3Q14576 367 aaKnown RBP20.21■□□□□ 0.83
COL9A3-204ENST00000463487 DLG2Q15700 870 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 USP39Q53GS9 565 aaKnown RBP20.21■□□□□ 0.83
COL9A3-204ENST00000463487 KIAA1211LQ6NV74 962 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 LINGO4Q6UY18 593 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 RCOR2Q8IZ40 523 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 ZNF366Q8N895 744 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 MDGA1Q8NFP4 955 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 RAPGEF5Q92565 580 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 PRCCQ92733 491 aaPredicted RBP20.21■□□□□ 0.83
COL9A3-204ENST00000463487 NELL1Q92832 810 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 FAF2Q96CS3 445 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 CELF6Q96J87 481 aaKnown RBP20.21■□□□□ 0.83
COL9A3-204ENST00000463487 ZNF830Q96NB3 372 aaPredicted RBP20.21■□□□□ 0.83
COL9A3-204ENST00000463487 NOL6Q9H6R4 1146 aaKnown RBP20.21■□□□□ 0.83
COL9A3-204ENST00000463487 PPP2R2CQ9Y2T4 447 aa20.21■□□□□ 0.83
COL9A3-204ENST00000463487 ZSCAN12O43309 604 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 ZNF217O75362 1048 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 GABRG2P18507 467 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 GLDCP23378 1020 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 PAPOLAP51003 745 aaKnown RBP20.2■□□□□ 0.82
COL9A3-204ENST00000463487 ARF5P84085 180 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 ZBTB16Q05516 673 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 AFMIDQ63HM1 303 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 ZNF776Q68DI1 518 aaPredicted RBP20.2■□□□□ 0.82
COL9A3-204ENST00000463487 KIAA1324Q6UXG2 1013 aaKnown RBP20.2■□□□□ 0.82
COL9A3-204ENST00000463487 C11orf74Q86VG3 221 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 TMPRSS6Q8IU80 811 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 CCDC50Q8IVM0 306 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 ATPAF2Q8N5M1 289 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 PCDH20Q8N6Y1 951 aaKnown RBP20.2■□□□□ 0.82
COL9A3-204ENST00000463487 LRRC57Q8N9N7 239 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 ZBTB44Q8NCP5 570 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 EXD1Q8NHP7 514 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 NSMCE1Q8WV22 266 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 OR8D1Q8WZ84 308 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 ISG20Q96AZ6 181 aaKnown RBP20.2■□□□□ 0.82
COL9A3-204ENST00000463487 RNF25Q96BH1 459 aaPredicted RBP20.2■□□□□ 0.82
COL9A3-204ENST00000463487 SIPA1Q96FS4 1042 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 RNF157Q96PX1 679 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 SLC39A8Q9C0K1 460 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 LZTFL1Q9NQ48 299 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 PRSS16Q9NQE7 514 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 PCDHA3Q9Y5H8 950 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 CHD5Q8TDI0 1954 aa20.2■□□□□ 0.82
COL9A3-204ENST00000463487 CKAP5Q14008 2032 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 APOL1O14791 398 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 ALOX15BO15296 676 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 SIN3BO75182 1162 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 DNTTP04053 509 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 MX2P20592 715 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 IL4RP24394 825 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 CTNNA2P26232 953 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 PXNP49023 591 aaPredicted RBP20.19■□□□□ 0.82
COL9A3-204ENST00000463487 RWDD2BP57060 319 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 COPS2P61201 443 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 TFDP2Q14188 446 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 PAFAH1B3Q15102 231 aaKnown RBP20.19■□□□□ 0.82
COL9A3-204ENST00000463487 TTC31Q49AM3 519 aaPredicted RBP20.19■□□□□ 0.82
COL9A3-204ENST00000463487 INO80DQ53TQ3 878 aaPredicted RBP20.19■□□□□ 0.82
COL9A3-204ENST00000463487 C22orf39Q6P5X5 142 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 RFX6Q8HWS3 928 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 NPWQ8N729 165 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 PCDH19Q8TAB3 1148 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 FRS2Q8WU20 508 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 MRGPRX1Q96LB2 322 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 TPSD1Q9BZJ3 242 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 CD248Q9HCU0 757 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 HAUS2Q9NVX0 235 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 UBA2Q9UBT2 640 aaPredicted RBP20.19■□□□□ 0.82
COL9A3-204ENST00000463487 SCML1Q9UN30 329 aa20.19■□□□□ 0.82
COL9A3-204ENST00000463487 PRAMEF11O60813 436 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 MT-CO1P00395 513 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 NDUFV2P19404 249 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 IL10RBQ08334 325 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 RFTN1Q14699 578 aaPredicted RBP20.18■□□□□ 0.82
COL9A3-204ENST00000463487 TFDP3Q5H9I0 405 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 C9orf64Q5T6V5 341 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 TMCO4Q5TGY1 634 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 NCBP2-AS2Q69YL0 99 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 Q6ZVU0 165 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 BZW1Q7L1Q6 419 aaKnown RBP20.18■□□□□ 0.82
COL9A3-204ENST00000463487 NT5DC3Q86UY8 548 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 ARHGAP12Q8IWW6 846 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 BBS5Q8N3I7 341 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 TRIM58Q8NG06 486 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 PTPRN2Q92932 1015 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 ERLEC1Q96DZ1 483 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 KLC2Q9H0B6 622 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 RSPH9Q9H1X1 276 aaPredicted RBP20.18■□□□□ 0.82
COL9A3-204ENST00000463487 SEMA4AQ9H3S1 761 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 ETNK2Q9NVF9 386 aa20.18■□□□□ 0.82
COL9A3-204ENST00000463487 IPO11Q9UI26 975 aaKnown RBP20.18■□□□□ 0.82
COL9A3-204ENST00000463487 A0A0U1RQJ8 604 aa20.17■□□□□ 0.82
COL9A3-204ENST00000463487 C3orf70A6NLC5 250 aaPredicted RBP20.17■□□□□ 0.82
COL9A3-204ENST00000463487 C1QTNF3-AMACRE9PGA6 284 aa20.17■□□□□ 0.82
COL9A3-204ENST00000463487 BNIP3LO60238 219 aa20.17■□□□□ 0.82
COL9A3-204ENST00000463487 RPP40O75818 363 aaKnown RBP20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms