RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	OR13H1	Q8NG92	308 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	SHC3	Q92529	594 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	FGF11	Q92914	225 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	NT5C3B	Q969T7	300 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	RPRD1A	Q96P16	312 aa	Predicted RBP	11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	FAM204A	Q9H8W3	233 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	FZD3	Q9NPG1	666 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	PIGV	Q9NUD9	493 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	KLHL11	Q9NVR0	708 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	ARHGEF38	Q9NXL2	777 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	VPS51	Q9UID3	782 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	SSUH2	Q9Y2M2	353 aa		11.45	□□□□□ -0.58
PTPN7-204	ENST00000462815	SYNJ2BP-COX16	A0A087WUM0	186 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815		A0A1W2PNU3	283 aa	Predicted RBP	11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815		A0A1W2PQU0	124 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	C1QTNF3-AMACR	E9PGA6	284 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	SMAD6	O43541	496 aa	Known RBP	11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	MAGEC1	O60732	1142 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	PAGE1	O75459	146 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	CLDN11	O75508	207 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	GRAP2	O75791	330 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	PIAS2	O75928	621 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	DXO	O77932	396 aa	Known RBP	11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	ADCY5	O95622	1261 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	MT-CO3	P00414	261 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	THEGL	P0DJG4	465 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	SLC9A1	P19634	815 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	CDH4	P55283	916 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	STX17	P56962	302 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	CDK17	Q00537	523 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	C1QBP	Q07021	282 aa	Known RBP	11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	FGL2	Q14314	439 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	STAT4	Q14765	748 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	PTPN20	Q4JDL3	420 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	NEK5	Q6P3R8	708 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	ENOSF1	Q7L5Y1	443 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	SLC26A9	Q7LBE3	791 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	BNIPL	Q7Z465	357 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	HORMAD1	Q86X24	394 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	ZNF843	Q8N446	348 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	CHST14	Q8NCH0	376 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	C1orf131	Q8NDD1	294 aa	Known RBP	11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	TMIE	Q8NEW7	156 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	ZNF397	Q8NF99	534 aa	Predicted RBP	11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	KLK6	Q92876	244 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	COL26A1	Q96A83	441 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	KLHDC7B	Q96G42	594 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	PPP1R13B	Q96KQ4	1090 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	NPY6R	Q99463	290 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	MYOC	Q99972	504 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	SIX2	Q9NPC8	291 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	COX16	Q9P0S2	106 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	SLC25A13	Q9UJS0	675 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	VPS28	Q9UK41	221 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	SNX10	Q9Y5X0	201 aa		11.44	□□□□□ -0.58
PTPN7-204	ENST00000462815	IGLV3-10	A0A075B6K4	115 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815		A0A0D9SEW6	157 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	BICDL2	A1A5D9	508 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	DRGX	A6NNA5	263 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	SLC31A1	O15431	190 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	RRP8	O43159	456 aa	Known RBP	11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	GNA14	O95837	355 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	MYF5	P13349	255 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	PLA2G2A	P14555	144 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	RRM1	P23921	792 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	CHRNA3	P32297	505 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	CXCR3	P49682	368 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	CLDN2	P57739	230 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	NUCB2	P80303	420 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	PAK1	Q13153	545 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	ZNF177	Q13360	481 aa	Predicted RBP	11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	ACCSL	Q4AC99	568 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	EFHC1	Q5JVL4	640 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	SEL1L3	Q68CR1	1132 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	LRRC69	Q6ZNQ3	347 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	C11orf57	Q6ZUT1	292 aa	Predicted RBP	11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	IRF2BP1	Q8IU81	584 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	PASD1	Q8IV76	773 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	FAM181A	Q8N9Y4	354 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	BAP1	Q92560	729 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	PGAP3	Q96FM1	320 aa	Predicted RBP	11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	BMF	Q96LC9	184 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	CRACR2A	Q9BSW2	395 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	SRRT	Q9BXP5	876 aa	Known RBP	11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	HDAC8	Q9BY41	377 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	ASCL3	Q9NQ33	180 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	TMPRSS4	Q9NRS4	437 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	APEX2	Q9UBZ4	518 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	SLC12A6	Q9UHW9	1150 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	WASF2	Q9Y6W5	498 aa		11.43	□□□□□ -0.58
PTPN7-204	ENST00000462815	TEX51	A0A1B0GUA7	166 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	RAD51B	O15315	384 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	OPA1	O60313	960 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	ZMPSTE24	O75844	475 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	CD160	O95971	181 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	GP1BA	P07359	652 aa		11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	HNRNPA2B1	P22626	353 aa	Known RBP	11.42	□□□□□ -0.58
PTPN7-204	ENST00000462815	NOS2	P35228	1153 aa		11.42	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms