RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 LDHAP00338 332 aaKnown RBP11.91□□□□□ -0.5
CPSF3-202ENST00000460593 MT-ND1P03886 318 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 MCF2P10911 925 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 ZFXP17010 805 aaPredicted RBP11.91□□□□□ -0.5
CPSF3-202ENST00000460593 NFKBIAP25963 317 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 RPL14P50914 215 aaKnown RBP11.91□□□□□ -0.5
CPSF3-202ENST00000460593 MLLT10P55197 1068 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 YBX1P67809 324 aaKnown RBP11.91□□□□□ -0.5
CPSF3-202ENST00000460593 RAB39AQ14964 217 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 PLCL1Q15111 1095 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 PPP1R3AQ16821 1122 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 TMEM132AQ24JP5 1023 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 NHSL2Q5HYW2 709 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 OLFML1Q6UWY5 402 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 WDR49Q8IV35 697 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 ALDH16A1Q8IZ83 802 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 RSPH1Q8WYR4 309 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 MFSD3Q96ES6 412 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 LRCH3Q96II8 777 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 NPLQ9BXD5 320 aaPredicted RBP11.91□□□□□ -0.5
CPSF3-202ENST00000460593 BRD8Q9H0E9 1235 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 FAM96AQ9H5X1 160 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 ZBTB26Q9HCK0 441 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 TRPC7Q9HCX4 862 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 COX16Q9P0S2 106 aa11.91□□□□□ -0.5
CPSF3-202ENST00000460593 TRIM38O00635 465 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 HOXC6P09630 235 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 CXCL8P10145 99 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 NCAM1P13591 858 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 HNRNPLP14866 589 aaKnown RBP eCLIP11.9□□□□□ -0.52e-6■■■□□ 17.7
CPSF3-202ENST00000460593 TPH1P17752 444 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 RCVRNP35243 200 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 MAGEA6P43360 314 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 NUMBP49757 651 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 TMEM214Q6NUQ4 689 aaKnown RBP11.9□□□□□ -0.5
CPSF3-202ENST00000460593 MCF2L2Q86YR7 1114 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 LRRC71Q8N4P6 559 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 CERS2Q96G23 380 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 CPB2Q96IY4 423 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 VPS50Q96JG6 964 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 PORCNQ9H237 461 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 CDYLQ9Y232 598 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 NEMP2A6NFY4 417 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 ALDH1A2O94788 518 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 ALDH2P05091 517 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 CDH3P22223 829 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 CNTFP26441 200 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 GP5P40197 560 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 TNK2Q07912 1038 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 TRIM25Q14258 630 aaKnown RBP11.9□□□□□ -0.5
CPSF3-202ENST00000460593 VPS72Q15906 364 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 ZBED5Q49AG3 693 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 CCDC92Q53HC0 331 aaPredicted RBP11.9□□□□□ -0.5
CPSF3-202ENST00000460593 STXBP5Q5T5C0 1151 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 GALNT18Q6P9A2 607 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 PODNQ7Z5L7 613 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 PIGZQ86VD9 579 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 HMGCLL1Q8TB92 370 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 KCTD4Q8WVF5 259 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 DLG3Q92796 817 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 ACE2Q9BYF1 805 aaPredicted RBP11.9□□□□□ -0.5
CPSF3-202ENST00000460593 FRMD8Q9BZ67 464 aaPredicted RBP11.9□□□□□ -0.5
CPSF3-202ENST00000460593 HIPK3Q9H422 1215 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 DTLQ9NZJ0 730 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 EGFL7Q9UHF1 273 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 VPS51Q9UID3 782 aa11.9□□□□□ -0.5
CPSF3-202ENST00000460593 CTDP1Q9Y5B0 961 aaPredicted RBP11.9□□□□□ -0.5
CPSF3-202ENST00000460593 NFICP08651 508 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 GOT1P17174 413 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 TGM2P21980 687 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 GJA8P48165 433 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 PERM1Q5SV97 790 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 STRIP1Q5VSL9 837 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 MAMDC4Q6UXC1 1216 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 CDKL3Q8IVW4 592 aaPredicted RBP11.89□□□□□ -0.51
CPSF3-202ENST00000460593 PNPLA1Q8N8W4 532 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 CCNYQ8ND76 341 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 BORCS5Q969J3 196 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 LHX5Q9H2C1 402 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 SIX4Q9UIU6 781 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 AP4E1Q9UPM8 1137 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 SLC8A2Q9UPR5 921 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 TRIP11Q15643 1979 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 KCNK1O00180 336 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 DLGAP1O14490 977 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 MED7O43513 233 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 GCATO75600 419 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 BMP10O95393 424 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 OXSR1O95747 527 aaPredicted RBP11.89□□□□□ -0.51
CPSF3-202ENST00000460593 ITGB3P05106 788 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 SBK3P0C264 359 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 TPSB2P20231 275 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 SEMA5AQ13591 1074 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 TPSAB1Q15661 275 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 ZNF667Q5HYK9 610 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 METTL21CQ5VZV1 264 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 EEF1DP3Q658K8 133 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 STEAP4Q687X5 459 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 ZNF280DQ6N043 979 aa11.89□□□□□ -0.51
CPSF3-202ENST00000460593 LSMEM2Q8N112 164 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms