RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 PRR23D2P0DMB1 279 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 GPD1P21695 349 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 IFNA8P32881 189 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 CCNG1P51959 295 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 MPP3Q13368 585 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 MOGSQ13724 837 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 CDO1Q16878 200 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 GOLGA7BQ2TAP0 167 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 SCARA3Q6AZY7 606 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 SPOCD1Q6ZMY3 1216 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 CCDC81Q6ZN84 652 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 DNAAF5Q86Y56 855 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 PPHLN1Q8NEY8 458 aaKnown RBP6.3□□□□□ -1.4
VPS13D-202ENST00000460333 HPS1Q92902 700 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 FAM162AQ96A26 154 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 VPS33AQ96AX1 596 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 C16orf70Q9BSU1 422 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 SHCBP1LQ9BZQ2 653 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 CHST12Q9NRB3 414 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 ARL8BQ9NVJ2 186 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 USE1Q9NZ43 259 aa6.3□□□□□ -1.4
VPS13D-202ENST00000460333 CCDC189A1A4V9 331 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 GPR25O00155 361 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 PQBP1O60828 265 aaKnown RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 F2P00734 622 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 PCSK1P29120 753 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 SSTR3P32745 418 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 MRPS6P82932 125 aaKnown RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 VEPH1Q14D04 833 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 TUBA3EQ6PEY2 450 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 RYBPQ8N488 228 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 BHLHE22Q8NFJ8 381 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 POP5Q969H6 163 aaKnown RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 CDRT15Q96T59 188 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 YME1L1Q96TA2 773 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 GPR88Q9GZN0 384 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 SENP6Q9GZR1 1112 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 BTBD3Q9Y2F9 522 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 KLHL20Q9Y2M5 609 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 RWDD3Q9Y3V2 267 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 ADGRA2Q96PE1 1338 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 BRCA1P38398 1863 aaKnown RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 HNRNPCL2B2RXH8 293 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 SLC10A3P09131 477 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 COX4I1P13073 169 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 PDGFRAP16234 1089 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 BCAT1P54687 386 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 C1QTNF8P60827 252 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 MRPS22P82650 360 aaKnown RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 BEX3Q00994 111 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 MTA1Q13330 715 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 MAMLD1Q13495 774 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 BOLA3Q53S33 107 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 GLB1LQ6UWU2 654 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 TDRPQ86YL5 185 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 KATNAL2Q8IYT4 538 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 OR8H2Q8N162 312 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 TCAIMQ8N3R3 496 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 OR7A2PQ8NGA2 310 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 RP9Q8TA86 221 aaKnown RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 PIWIL2Q8TC59 973 aaKnown RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 QKIQ96PU8 341 aaKnown RBP eCLIP6.29□□□□□ -1.45e-6■■■□□ 15.5
VPS13D-202ENST00000460333 RTKNQ9BST9 563 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 ZNF556Q9HAH1 456 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 CREBZFQ9NS37 354 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 KLHL11Q9NVR0 708 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 KLHL3Q9UH77 587 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 PRELID1Q9Y255 219 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 DRG1Q9Y295 367 aaKnown RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 STXBP5LQ9Y2K9 1186 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 TELO2Q9Y4R8 837 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 SMCHD1A6NHR9 2005 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 E9PBE3 544 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 MTSS1O43312 755 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 ATP9BO43861 1147 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 WBP4O75554 376 aaKnown RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 RECQL4O94761 1208 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 CST3P01034 146 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 UNGP13051 313 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 TFE3P19532 575 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 KRT20P35900 424 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 NDST1P52848 882 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 KHDC1Q4VXA5 237 aaKnown RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 TTC23Q5W5X9 447 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 PRR23CQ6ZRP0 262 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 PRELID2Q8N945 189 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 FAM71DQ8N9W8 422 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 PNPT1Q8TCS8 783 aaKnown RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 ACMSDQ8TDX5 336 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 EXT2Q93063 718 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 TMEM169Q96HH4 297 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 ZNF317Q96PQ6 595 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 GPATCH1Q9BRR8 931 aaKnown RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 TMEM245Q9H330 911 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 RUBCNLQ9H714 662 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 POLR1BQ9H9Y6 1135 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 APOBEC3GQ9HC16 384 aaKnown RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 CRNNQ9UBG3 495 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 ANKRD6Q9Y2G4 727 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 CLUHO75153 1309 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms