RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 PTPN2P17706 415 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 BGNP21810 368 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 FMO4P31512 558 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 HADHBP55084 474 aaKnown RBP7.52□□□□□ -1.21
SYNE1-213ENST00000448038 IRF5Q13568 498 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 ASTE1Q2TB18 679 aaPredicted RBP7.52□□□□□ -1.21
SYNE1-213ENST00000448038 SETMARQ53H47 684 aaPredicted RBP7.52□□□□□ -1.21
SYNE1-213ENST00000448038 SPDYCQ5MJ68 293 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 ZC3H3Q8IXZ2 948 aaKnown RBP7.52□□□□□ -1.21
SYNE1-213ENST00000448038 PHACTR4Q8IZ21 702 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 TCP10LQ8TDR4 215 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 TMEM159Q96B96 161 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 TMPRSS4Q9NRS4 437 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 MRGBPQ9NV56 204 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 LNPEPQ9UIQ6 1025 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 HBS1LQ9Y450 684 aaKnown RBP7.52□□□□□ -1.21
SYNE1-213ENST00000448038 CHUKO15111 745 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 LMNAP02545 664 aaKnown RBP7.52□□□□□ -1.21
SYNE1-213ENST00000448038 CFHP08603 1231 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 PIRTP0C851 137 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 FECHP22830 423 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 L1CAMP32004 1257 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 ILF2Q12905 390 aaKnown RBP7.52□□□□□ -1.21
SYNE1-213ENST00000448038 HIC1Q14526 733 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 ATAT1Q5SQI0 421 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 TPGS2Q68CL5 300 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 TRMT11Q7Z4G4 463 aaKnown RBP7.52□□□□□ -1.21
SYNE1-213ENST00000448038 OOSP2Q86WS3 158 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 RFWD2Q8NHY2 731 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 AUTS2Q8WXX7 1259 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 PIK3R5Q8WYR1 880 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 TUBGCP3Q96CW5 907 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 CERS2Q96G23 380 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 SPATA17Q96L03 361 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 FLRT1Q9NZU1 646 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 PCDHA11Q9Y5I1 949 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 PTPRJQ12913 1337 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 CFAP73A6NFT4 308 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 KCNU1A8MYU2 1149 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 HNRNPCL1O60812 293 aaKnown RBP7.52□□□□□ -1.21
SYNE1-213ENST00000448038 DDHD2O94830 711 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 GRK2P25098 689 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 RFC2P35250 354 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 ABCG1P45844 678 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 SLC11A1P49279 550 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 WNT3AP56704 352 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 CAMK2GQ13555 558 aaPredicted RBP7.52□□□□□ -1.21
SYNE1-213ENST00000448038 PTK2BQ14289 1009 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 PARP15Q460N3 678 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 TEX44Q53QW1 395 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 RD3Q7Z3Z2 195 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 PHF21BQ96EK2 531 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 SRPK1Q96SB4 655 aaKnown RBP7.52□□□□□ -1.21
SYNE1-213ENST00000448038 OMDQ99983 421 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 ARHGEF4Q9NR80 690 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 LOC100653049A0A140TA62 436 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 IFRD1O00458 451 aaPredicted RBP7.52□□□□□ -1.21
SYNE1-213ENST00000448038 AIM2O14862 343 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 KRT34O76011 436 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 LBX1P52954 281 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 ATXN1P54253 815 aaKnown RBP7.52□□□□□ -1.21
SYNE1-213ENST00000448038 BTKQ06187 659 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 CDK18Q07002 472 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 TRIP4Q15650 581 aaPredicted RBP7.52□□□□□ -1.21
SYNE1-213ENST00000448038 PPP2R2DQ66LE6 453 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 PRPF39Q86UA1 669 aaKnown RBP7.52□□□□□ -1.21
SYNE1-213ENST00000448038 ING5Q8WYH8 240 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 CMTM5Q96DZ9 223 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 APOPT1Q96IL0 206 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 ZNF333Q96JL9 665 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 FAR2Q96K12 515 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 STN1Q9H668 368 aaKnown RBP7.52□□□□□ -1.21
SYNE1-213ENST00000448038 GLOD4Q9HC38 313 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 DNAJC16Q9Y2G8 782 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 SNX10Q9Y5X0 201 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 CPQQ9Y646 472 aa7.52□□□□□ -1.21
SYNE1-213ENST00000448038 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-213ENST00000448038 FAM95CA0A1B0GW59 222 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 GUCA1CO95843 209 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 IL1BP01584 269 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 HTR7P34969 479 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 SH3PXD2AQ5TCZ1 1133 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 RGS9BPQ6ZS82 235 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 OSTM1Q86WC4 334 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 SLC22A9Q8IVM8 553 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 FUKQ8N0W3 1084 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 PCYOX1LQ8NBM8 494 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 ZMAT2Q96NC0 199 aaKnown RBP7.51□□□□□ -1.21
SYNE1-213ENST00000448038 PANX3Q96QZ0 392 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 YIPF2Q9BWQ6 316 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 ASPSCR1Q9BZE9 553 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 ASB8Q9H765 288 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 AGO3Q9H9G7 860 aaKnown RBP7.51□□□□□ -1.21
SYNE1-213ENST00000448038 PSD3Q9NYI0 1048 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-213ENST00000448038 FBXW11Q9UKB1 542 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 GNEQ9Y223 722 aaKnown RBP7.51□□□□□ -1.21
SYNE1-213ENST00000448038 PCDHB9Q9Y5E1 797 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 SQORQ9Y6N5 450 aa7.51□□□□□ -1.21
SYNE1-213ENST00000448038 C1QTNF3-AMACRE9PGA6 284 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms