RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 DUSP11O75319 330 aaKnown RBP16.28■□□□□ 0.2
SHQ1-202ENST00000444040 HSPA4LO95757 839 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 SBK3P0C264 359 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 ANPEPP15144 967 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 GABRB3P28472 473 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 CYP2C18P33260 490 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 HADHAP40939 763 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 COG7P83436 770 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 RALGPS1Q5JS13 557 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 C17orf99Q6UX52 265 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 SCAMP5Q8TAC9 235 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 MAPK15Q8TD08 544 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 TMEM209Q96SK2 561 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 MTG1Q9BT17 334 aaPredicted RBP16.28■□□□□ 0.2
SHQ1-202ENST00000444040 GPAMQ9HCL2 828 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 DNAJB4Q9UDY4 337 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 SLC39A10Q9ULF5 831 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 LRCH1Q9Y2L9 728 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 IRAK2O43187 625 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 B3GAT3O94766 335 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 BTKQ06187 659 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 TAF1CQ15572 869 aaPredicted RBP16.28■□□□□ 0.2
SHQ1-202ENST00000444040 ANO4Q32M45 955 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 SLC9B1Q4ZJI4 515 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 RWDD4Q6NW29 188 aaKnown RBP16.28■□□□□ 0.2
SHQ1-202ENST00000444040 PGM2L1Q6PCE3 622 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 CXCL17Q6UXB2 119 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 KBTBD2Q8IY47 623 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 PHTF2Q8N3S3 785 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 OR10T2Q8NGX3 314 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 SIK2Q9H0K1 926 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 RHOJQ9H4E5 214 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 NSMCE4AQ9NXX6 385 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 CPSF2Q9P2I0 782 aaKnown RBP16.28■□□□□ 0.2
SHQ1-202ENST00000444040 ANGPTL2Q9UKU9 493 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 AAR2Q9Y312 384 aaKnown RBP16.28■□□□□ 0.2
SHQ1-202ENST00000444040 TRPM7Q96QT4 1865 aa16.28■□□□□ 0.2
SHQ1-202ENST00000444040 DFFAO00273 331 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 ZBTB14O43829 449 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 MT-CYBP00156 380 aaPredicted RBP16.27■□□□□ 0.2
SHQ1-202ENST00000444040 POMCP01189 267 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 PDHA1P08559 390 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 HOXC13P31276 330 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 ERFP50548 548 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 GNASQ5JWF2 1037 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 TMCO4Q5TGY1 634 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 DENND5AQ6IQ26 1287 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 SERINC5Q86VE9 423 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.27■□□□□ 0.2
SHQ1-202ENST00000444040 PPFIBP2Q8ND30 876 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 CMTM5Q96DZ9 223 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 FCRL5Q96RD9 977 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 IL12RB2Q99665 862 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 MAN1C1Q9NR34 630 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 DONSONQ9NYP3 566 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 CCDC78A2IDD5 438 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 GPR182O15218 404 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 MGEA5O60502 916 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 CCNT2O60583 730 aaKnown RBP16.27■□□□□ 0.2
SHQ1-202ENST00000444040 MAFKO60675 156 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 KPNA6O60684 536 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 ZNF623O75123 536 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 H2AFYO75367 372 aaKnown RBP16.27■□□□□ 0.2
SHQ1-202ENST00000444040 AHSGP02765 367 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 NCF2P19878 526 aaPredicted RBP16.27■□□□□ 0.2
SHQ1-202ENST00000444040 NUMBP49757 651 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 PGGT1BP53609 377 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 MRPS35P82673 323 aaKnown RBP16.27■□□□□ 0.2
SHQ1-202ENST00000444040 PCID2Q5JVF3 399 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 MANEALQ5VSG8 457 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 PKN3Q6P5Z2 889 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 SLC25A41Q8N5S1 370 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 HAPLN3Q96S86 360 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 ACE2Q9BYF1 805 aaPredicted RBP16.27■□□□□ 0.2
SHQ1-202ENST00000444040 SHCBP1LQ9BZQ2 653 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 SUFUQ9UMX1 484 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 ANKRD6Q9Y2G4 727 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 SHROOM3Q8TF72 1996 aa16.27■□□□□ 0.2
SHQ1-202ENST00000444040 M0QZQ0 153 aa16.27■□□□□ 0.19
SHQ1-202ENST00000444040 TK2O00142 265 aa16.27■□□□□ 0.19
SHQ1-202ENST00000444040 SKIP12755 728 aa16.27■□□□□ 0.19
SHQ1-202ENST00000444040 AP2B1P63010 937 aa16.27■□□□□ 0.19
SHQ1-202ENST00000444040 KLC1Q07866 573 aa16.27■□□□□ 0.19
SHQ1-202ENST00000444040 METTL23Q86XA0 190 aa16.27■□□□□ 0.19
SHQ1-202ENST00000444040 CNTN4Q8IWV2 1026 aa16.27■□□□□ 0.19
SHQ1-202ENST00000444040 TDRD5Q8NAT2 981 aaKnown RBP16.27■□□□□ 0.19
SHQ1-202ENST00000444040 ACTRT2Q8TDY3 377 aa16.27■□□□□ 0.19
SHQ1-202ENST00000444040 MOCOSQ96EN8 888 aa16.27■□□□□ 0.19
SHQ1-202ENST00000444040 TBL1YQ9BQ87 522 aa16.27■□□□□ 0.19
SHQ1-202ENST00000444040 DCXO43602 365 aa16.26■□□□□ 0.19
SHQ1-202ENST00000444040 APOA4P06727 396 aa16.26■□□□□ 0.19
SHQ1-202ENST00000444040 PGFP49763 221 aa16.26■□□□□ 0.19
SHQ1-202ENST00000444040 BRMS1LQ5PSV4 323 aa16.26■□□□□ 0.19
SHQ1-202ENST00000444040 METTL21CQ5VZV1 264 aa16.26■□□□□ 0.19
SHQ1-202ENST00000444040 CAPRIN2Q6IMN6 1127 aaKnown RBP16.26■□□□□ 0.19
SHQ1-202ENST00000444040 IRGCQ6NXR0 463 aa16.26■□□□□ 0.19
SHQ1-202ENST00000444040 ZYG11AQ6WRX3 759 aa16.26■□□□□ 0.19
SHQ1-202ENST00000444040 FRMD7Q6ZUT3 714 aa16.26■□□□□ 0.19
SHQ1-202ENST00000444040 ATPAF2Q8N5M1 289 aa16.26■□□□□ 0.19
SHQ1-202ENST00000444040 RDH11Q8TC12 318 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms