RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 CACNG3O60359 315 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 JCHAINP01591 159 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 ITIH2P19823 946 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 SP100P23497 879 aaPredicted RBP23.47■■□□□ 1.35
CPSF4-204ENST00000436336 CD70P32970 193 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 RENBPP51606 427 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 VSNL1P62760 191 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 CALCOCO2Q13137 446 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 PID1Q7Z2X4 250 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 DCAF4L2Q8NA75 395 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 IFT81Q8WYA0 676 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 TEKT5Q96M29 485 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 ECT2Q9H8V3 914 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 HPS4Q9NQG7 708 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 NUMBLQ9Y6R0 609 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 SEC31AO94979 1220 aaKnown RBP23.47■■□□□ 1.35
CPSF4-204ENST00000436336 HLA-FP30511 346 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 LEXMQ3ZCV2 418 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 PCGF5Q86SE9 256 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 CPA6Q8N4T0 437 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 EIF1ADQ8N9N8 165 aaKnown RBP23.47■■□□□ 1.35
CPSF4-204ENST00000436336 TRMT61BQ9BVS5 477 aaKnown RBP23.47■■□□□ 1.35
CPSF4-204ENST00000436336 PHF7Q9BWX1 381 aaPredicted RBP23.47■■□□□ 1.35
CPSF4-204ENST00000436336 GRHL1Q9NZI5 618 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 FBXO10Q9UK96 956 aa23.47■■□□□ 1.35
CPSF4-204ENST00000436336 TPX2Q9ULW0 747 aaKnown RBP23.47■■□□□ 1.35
CPSF4-204ENST00000436336 TICRRQ7Z2Z1 1910 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 CBX4O00257 560 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 CARSP49589 748 aaKnown RBP23.46■■□□□ 1.35
CPSF4-204ENST00000436336 NR1H3Q13133 447 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 RUNX3Q13761 415 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 PLEKHG6Q3KR16 790 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 FAM182AQ5T1J6 154 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 TMCO4Q5TGY1 634 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 MARC1Q5VT66 337 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 IZUMO3Q5VZ72 239 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 ITPRIPL1Q6GPH6 555 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 APCDD1Q8J025 514 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 TEX26Q8N6G2 289 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 USP33Q8TEY7 942 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 ACDQ96AP0 544 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 RPP25Q9BUL9 199 aaKnown RBP23.46■■□□□ 1.35
CPSF4-204ENST00000436336 C2orf49Q9BVC5 232 aaPredicted RBP23.46■■□□□ 1.35
CPSF4-204ENST00000436336 FAM129AQ9BZQ8 928 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 ABCB8Q9NUT2 735 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 RBM22Q9NW64 420 aaKnown RBP eCLIP23.46■■□□□ 1.354e-6■■■□□ 14.6
CPSF4-204ENST00000436336 IGSF9Q9P2J2 1179 aa23.46■■□□□ 1.35
CPSF4-204ENST00000436336 C2CD4DB7Z1M9 353 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 NEBLO76041 1014 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 GLDCP23378 1020 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 GDI1P31150 447 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 NUMBP49757 651 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 ARF5P84085 180 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 TNK2Q07912 1038 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 SLC10A7Q0GE19 358 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 RFTN1Q14699 578 aaPredicted RBP23.45■■□□□ 1.34
CPSF4-204ENST00000436336 LBRQ14739 615 aaKnown RBP23.45■■□□□ 1.34
CPSF4-204ENST00000436336 SMAD2Q15796 467 aaKnown RBP23.45■■□□□ 1.34
CPSF4-204ENST00000436336 CCNI2Q6ZMN8 369 aaPredicted RBP23.45■■□□□ 1.34
CPSF4-204ENST00000436336 PLCD3Q8N3E9 789 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 DDX51Q8N8A6 666 aaKnown RBP eCLIP23.45■■□□□ 1.34
CPSF4-204ENST00000436336 NAT16Q8N8M0 369 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 AGAP3Q96P47 875 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 RAB6BQ9NRW1 208 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 UBA2Q9UBT2 640 aaPredicted RBP23.45■■□□□ 1.34
CPSF4-204ENST00000436336 GGA2Q9UJY4 613 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 XIRP2A4UGR9 3374 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 ZBTB24O43167 697 aaPredicted RBP23.45■■□□□ 1.34
CPSF4-204ENST00000436336 ZMPSTE24O75844 475 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 METTL18O95568 372 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 FDFT1P37268 417 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 BASP1P80723 227 aaKnown RBP23.45■■□□□ 1.34
CPSF4-204ENST00000436336 HLTFQ14527 1009 aaKnown RBP eCLIP23.45■■□□□ 1.34
CPSF4-204ENST00000436336 DMC1Q14565 340 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 PARP6Q2NL67 630 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 PITRM1Q5JRX3 1037 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 ASTLQ6HA08 431 aaPredicted RBP23.45■■□□□ 1.34
CPSF4-204ENST00000436336 CNTD1Q8N815 330 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 ART4Q93070 314 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 VPS51Q9UID3 782 aa23.45■■□□□ 1.34
CPSF4-204ENST00000436336 INTS6Q9UL03 887 aaKnown RBP23.45■■□□□ 1.34
CPSF4-204ENST00000436336 CXorf51AA0A1B0GTR3 108 aa23.44■■□□□ 1.34
CPSF4-204ENST00000436336 OTOL1A6NHN0 477 aaPredicted RBP23.44■■□□□ 1.34
CPSF4-204ENST00000436336 SNAP91O60641 907 aa23.44■■□□□ 1.34
CPSF4-204ENST00000436336 PABPC1P11940 636 aaKnown RBP23.44■■□□□ 1.34
CPSF4-204ENST00000436336 MMP13P45452 471 aa23.44■■□□□ 1.34
CPSF4-204ENST00000436336 ITGA8P53708 1063 aa23.44■■□□□ 1.34
CPSF4-204ENST00000436336 CAV1Q03135 178 aa23.44■■□□□ 1.34
CPSF4-204ENST00000436336 KIAA0907Q7Z7F0 614 aaPredicted RBP23.44■■□□□ 1.34
CPSF4-204ENST00000436336 ETFBKMTQ8IXQ9 262 aa23.44■■□□□ 1.34
CPSF4-204ENST00000436336 BBS5Q8N3I7 341 aa23.44■■□□□ 1.34
CPSF4-204ENST00000436336 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP23.44■■□□□ 1.343e-10■■■■■ 88.3
CPSF4-204ENST00000436336 GBA3Q9H227 469 aa23.44■■□□□ 1.34
CPSF4-204ENST00000436336 ETNK1Q9HBU6 452 aa23.44■■□□□ 1.34
CPSF4-204ENST00000436336 DNAJC17Q9NVM6 304 aaKnown RBP23.44■■□□□ 1.34
CPSF4-204ENST00000436336 RSPH14Q9UHP6 348 aa23.44■■□□□ 1.34
CPSF4-204ENST00000436336 ANAPC5Q9UJX4 755 aa23.44■■□□□ 1.34
CPSF4-204ENST00000436336 NFU1Q9UMS0 254 aa23.44■■□□□ 1.34
CPSF4-204ENST00000436336 CD68P34810 354 aaPredicted RBP23.43■■□□□ 1.34
CPSF4-204ENST00000436336 DGKGP49619 791 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms