RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ZPBP2Q6X784 338 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 EEPD1Q7L9B9 569 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 ZNF786Q8N393 782 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 PCDH20Q8N6Y1 951 aaKnown RBP10.88□□□□□ -0.67
USP54-204ENST00000422491 RNF169Q8NCN4 708 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 TNIP2Q8NFZ5 429 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 ATXN7L3BQ96GX2 97 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 AGAP3Q96P47 875 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 TBCBQ99426 244 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 NAT9Q9BTE0 207 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 ELOVL4Q9GZR5 314 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 UNC93B1Q9H1C4 597 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 SLC38A10Q9HBR0 1119 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 NGRNQ9NPE2 291 aaKnown RBP10.88□□□□□ -0.67
USP54-204ENST00000422491 SMOXQ9NWM0 555 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 GNPTGQ9UJJ9 305 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 A0A0A0MRY4 1105 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 PRORSD1PA6NEY8 169 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 KCNU1A8MYU2 1149 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 MAFGO15525 162 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 PAPSS1O43252 624 aaPredicted RBP10.88□□□□□ -0.67
USP54-204ENST00000422491 TOMM70O94826 608 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 MPOP05164 745 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 F7P08709 466 aaPredicted RBP10.88□□□□□ -0.67
USP54-204ENST00000422491 BMP2P12643 396 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 GRIA4P48058 902 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 PRKCQQ04759 706 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 BNIP3Q12983 259 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 PRKAA1Q13131 559 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 ATP1A4Q13733 1029 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 CAPSQ13938 189 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 RAB39AQ14964 217 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 SLC27A3Q5K4L6 730 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 HEATR6Q6AI08 1181 aaKnown RBP10.88□□□□□ -0.67
USP54-204ENST00000422491 NXNQ6DKJ4 435 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 C16orf87Q6PH81 154 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 TTC33Q6PID6 262 aaPredicted RBP10.88□□□□□ -0.67
USP54-204ENST00000422491 TMEM151AQ8N4L1 468 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 MFSD2AQ8NA29 543 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 SPATA13Q96N96 652 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 FCRL3Q96P31 734 aaPredicted RBP10.88□□□□□ -0.67
USP54-204ENST00000422491 IL22Q9GZX6 179 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 DHX35Q9H5Z1 703 aaKnown RBP10.88□□□□□ -0.67
USP54-204ENST00000422491 CAB39LQ9H9S4 337 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 MRPL40Q9NQ50 206 aaKnown RBP10.88□□□□□ -0.67
USP54-204ENST00000422491 EIF2B3Q9NR50 452 aaKnown RBP10.88□□□□□ -0.67
USP54-204ENST00000422491 VTI1BQ9UEU0 232 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 CPSF3Q9UKF6 684 aaKnown RBP10.88□□□□□ -0.67
USP54-204ENST00000422491 SARDHQ9UL12 918 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 MYO18AQ92614 2054 aaKnown RBP10.88□□□□□ -0.67
USP54-204ENST00000422491 DPYSL4O14531 572 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 C2P06681 752 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 SBK3P0C264 359 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 TTKP33981 857 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 SPRP35270 261 aaPredicted RBP10.88□□□□□ -0.67
USP54-204ENST00000422491 C6orf10Q5SRN2 563 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 IRAK1BP1Q5VVH5 260 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 GPR107Q5VW38 600 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 LIPMQ5VYY2 423 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 OR6B2Q6IFH4 312 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 GK5Q6ZS86 529 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 TMEM26Q6ZUK4 368 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 LSMEM2Q8N112 164 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 UBA3Q8TBC4 463 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 PGLYRP2Q96PD5 576 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 HEPHQ9BQS7 1158 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 NAA50Q9GZZ1 169 aaKnown RBP10.88□□□□□ -0.67
USP54-204ENST00000422491 SPATA7Q9P0W8 599 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 CORINQ9Y5Q5 1042 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 SLCO1B7G3V0H7 640 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 TK2O00142 265 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 OGTO15294 1046 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 MSCO60682 206 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 NR3C2P08235 984 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 GSTT2P0CG29 244 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 GSTT2BP0CG30 244 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 CCND2P30279 289 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 EPHX2P34913 555 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 NR2C2P49116 596 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 RPS3AP61247 264 aaKnown RBP10.87□□□□□ -0.67
USP54-204ENST00000422491 RALGDSQ12967 914 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 LRP8Q14114 963 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 FAM182BQ5T319 152 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 XRRA1Q6P2D8 792 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 ZYG11AQ6WRX3 759 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 STRA8Q7Z7C7 330 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 ZNF354CQ86Y25 554 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 URGCPQ8TCY9 931 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 HTR3CQ8WXA8 447 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 MAELQ96JY0 434 aaKnown RBP10.87□□□□□ -0.67
USP54-204ENST00000422491 ACE2Q9BYF1 805 aaPredicted RBP10.87□□□□□ -0.67
USP54-204ENST00000422491 TSPYL2Q9H2G4 693 aaPredicted RBP10.87□□□□□ -0.67
USP54-204ENST00000422491 DTLQ9NZJ0 730 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 CD300AQ9UGN4 299 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 HEATR9A2RTY3 570 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 J3QRK9 145 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 CILPO75339 1184 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 TIPRLO75663 272 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 POLBP06746 335 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 TMED10P49755 219 aaKnown RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms