RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 KATNAL2Q8IYT4 538 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 OFCC1Q8IZS5 231 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 REEP2Q9BRK0 252 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 IGSF9Q9P2J2 1179 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 PADI4Q9UM07 663 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 BARX2Q9UMQ3 279 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-206ENST00000409809 HPSEQ9Y251 543 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 TBX2Q13207 712 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-206ENST00000409809 CCNIQ14094 377 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 ANKS6Q68DC2 871 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 RFKQ969G6 155 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 PPP1R14AQ96A00 147 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 CRLS1Q9UJA2 301 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 ASB14A6NK59 587 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 KIF28PB7ZC32 967 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 FAM189A2Q15884 450 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 PGS1Q32NB8 556 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 FOXR2Q6PJQ5 311 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 CLCC1Q96S66 551 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 TMEM47Q9BQJ4 181 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 GREM2Q9H772 168 aa13.06□□□□□ -0.32
COL6A3-206ENST00000409809 TTLL4Q14679 1199 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 FAM47BQ8NA70 645 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 FAM217BQ9NTX9 383 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-206ENST00000409809 ANGPT4Q9Y264 503 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 DHRS7Q9Y394 339 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 RPN2P04844 631 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 IL18Q14116 193 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 UBE2SQ16763 222 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 TBC1D10CQ8IV04 446 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 AP1S3Q96PC3 154 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 CITO14578 2027 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 RPLP2P05387 115 aaKnown RBP13.05□□□□□ -0.32
COL6A3-206ENST00000409809 PHKG2P15735 406 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 OSTNP61366 133 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 TWF1Q12792 350 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 HIPK3Q9H422 1215 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 TAS2R13Q9NYV9 303 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 SIK3Q9Y2K2 1263 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 GLI2P10070 1586 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 CCDC189A1A4V9 331 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 ITGA2BP08514 1039 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 FGFR2P21802 821 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 ARHGAP36Q6ZRI8 547 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 ABCC3O15438 1527 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 METP08581 1390 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 PIGBOS1A0A0B4J2F0 54 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 ALDH1A1P00352 501 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 DARSP14868 501 aaKnown RBP13.05□□□□□ -0.32
COL6A3-206ENST00000409809 NFKB1P19838 968 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 CAMK2GQ13555 558 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-206ENST00000409809 DENND6BQ8NEG7 585 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 RERGLQ9H628 205 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 RAB23Q9ULC3 237 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 HDAC3O15379 428 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 PLA2G6O60733 806 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 DBTP11182 482 aaKnown RBP13.05□□□□□ -0.32
COL6A3-206ENST00000409809 PRKCEQ02156 737 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 MVKQ03426 396 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 OCLNQ16625 522 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 MSANTD1Q6ZTZ1 278 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 SMYD1Q8NB12 490 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 TLR10Q9BXR5 811 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 ANKEF1Q9NU02 776 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 POLIQ9UNA4 740 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 SLC9A8Q9Y2E8 581 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 CASP1P29466 404 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 MCAMP43121 646 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 E2F2Q14209 437 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 DCAF6Q58WW2 860 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 CCNYL2Q5T2Q4 361 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 ERAP2Q6P179 960 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 KCNMB4Q86W47 210 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 IPCEF1Q8WWN9 437 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-206ENST00000409809 CCDC167Q9P0B6 97 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 LNPEPQ9UIQ6 1025 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 GIT1Q9Y2X7 761 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 DYRK1BQ9Y463 629 aa13.05□□□□□ -0.32
COL6A3-206ENST00000409809 SYNDIG1LA6NDD5 238 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 PDE2AO00408 941 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-206ENST00000409809 CENPAP49450 140 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 GPR15P49685 360 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 FAXCQ5TGI0 409 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 CIAPIN1Q6FI81 312 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 ZNF438Q7Z4V0 828 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 CNTD1Q8N815 330 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 SPERTQ8NA61 448 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 DDX17Q92841 729 aaKnown RBP13.04□□□□□ -0.32
COL6A3-206ENST00000409809 RAP2CQ9Y3L5 183 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 SNX8Q9Y5X2 465 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 ILVBLA1L0T0 632 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 SLC30A4O14863 429 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 TFECO14948 347 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-206ENST00000409809 TOP3BO95985 862 aaKnown RBP13.04□□□□□ -0.32
COL6A3-206ENST00000409809 IDH2P48735 452 aaKnown RBP13.04□□□□□ -0.32
COL6A3-206ENST00000409809 FBXL16Q8N461 479 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 OR2T34Q8NGX1 318 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 OR2T3Q8NH03 318 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 MAPK9P45984 424 aa13.04□□□□□ -0.32
COL6A3-206ENST00000409809 UGT2B15P54855 530 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms