RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 CST8O60676 142 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 CNTN5O94779 1100 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 FAM107AO95990 144 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 APOC2P02655 101 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 TYRP14679 529 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 GOT1P17174 413 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 EPHB2P29323 1055 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 ARL4AP40617 200 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 CCT5P48643 541 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 ZNF135P52742 658 aaPredicted RBP13.73□□□□□ -0.21
LIMS1-204ENST00000409441 TPI1P60174 286 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 OTUD4Q01804 1114 aaKnown RBP13.73□□□□□ -0.21
LIMS1-204ENST00000409441 GAD2Q05329 585 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 MMRN1Q13201 1228 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 DPYSL3Q14195 570 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 ITPRIPL2Q3MIP1 535 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 ALFQ53S48 1182 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 MPP7Q5T2T1 576 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 FYB2Q5VWT5 728 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 RFX8Q6ZV50 586 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 NLRP14Q86W24 1093 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 GJD3Q8N144 294 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 ACTL9Q8TC94 416 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 CSGALNACT1Q8TDX6 532 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 EPS8L3Q8TE67 593 aaKnown RBP13.73□□□□□ -0.21
LIMS1-204ENST00000409441 TBC1D31Q96DN5 1066 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 CCDC77Q9BR77 488 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 ZYG11BQ9C0D3 744 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 TRPV5Q9NQA5 729 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 MARK1Q9P0L2 795 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 GGA2Q9UJY4 613 aa13.73□□□□□ -0.21
LIMS1-204ENST00000409441 ATXN2Q99700 1313 aaKnown RBP13.73□□□□□ -0.21
LIMS1-204ENST00000409441 TYW5A2RUC4 315 aaKnown RBP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 GMNCA6NCL1 334 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 SGK1O00141 431 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 ACSL3O95573 720 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 PENKP01210 267 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 ADH5P11766 374 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 SRFP11831 508 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 RHOQP17081 205 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 HTR7P34969 479 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 GPS1Q13098 491 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 TFDP2Q14188 446 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 STAT4Q14765 748 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 TJAP1Q5JTD0 557 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 RNASEH2BQ5TBB1 312 aaKnown RBP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 TTC39BQ5VTQ0 682 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 SRLQ86TD4 932 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 CIR1Q86X95 450 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 RFX6Q8HWS3 928 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 RIBC1Q8N443 379 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 NAT16Q8N8M0 369 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 NECAB3Q96P71 396 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 CSPG4P5Q96PW8 444 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 CD320Q9NPF0 282 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 SLC2A4RGQ9NR83 387 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 RCOR3Q9P2K3 495 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 LGALS13Q9UHV8 139 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 SORCS3Q9UPU3 1222 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 MYO10Q9HD67 2058 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 ZNF487B1APH4 448 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 HOXC11O43248 304 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 CLDN11O75508 207 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 AMPD1P23109 780 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 HOXD9P28356 352 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 HOXC13P31276 330 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 GJA4P35212 333 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 MAGEA4P43358 317 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 CDH4P55283 916 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 PFKPQ01813 784 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 ZNF177Q13360 481 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 KYNUQ16719 465 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 SKIDA1Q1XH10 827 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 ANKRD20A8PQ5CZ79 823 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 UBAP2Q5T6F2 1119 aaKnown RBP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 CARNMT1Q8N4J0 409 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 ZNF473Q8WTR7 871 aaKnown RBP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 CCT8L2Q96SF2 557 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 RBM15Q96T37 977 aaKnown RBP eCLIP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 ZNF670Q9BS34 389 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 MAK16Q9BXY0 300 aaKnown RBP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 CATSPERBQ9H7T0 1116 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 CLEC4EQ9ULY5 219 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 NEU3Q9UQ49 428 aa13.72□□□□□ -0.21
LIMS1-204ENST00000409441 RRP15Q9Y3B9 282 aaKnown RBP13.72□□□□□ -0.21
LIMS1-204ENST00000409441 A0A1B0GVM2 712 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 TCAF2A6NFQ2 919 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 SMIM23A6NLE4 172 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 E7EVH7 732 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 H0Y626 953 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 MCF2LO15068 1137 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 FGF10O15520 208 aaPredicted RBP13.71□□□□□ -0.22
LIMS1-204ENST00000409441 ERCC2P18074 760 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 IFI35P80217 286 aaPredicted RBP13.71□□□□□ -0.22
LIMS1-204ENST00000409441 DPYSQ14117 519 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 GAB4Q2WGN9 574 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 MICALCLQ6ZW33 695 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 CHST9Q7L1S5 443 aa13.71□□□□□ -0.22
LIMS1-204ENST00000409441 TFAP2DQ7Z6R9 452 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms