RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 PPM1FP49593 454 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-206ENST00000376646 EGR4Q05215 589 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 BLMHQ13867 455 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 SPARCL1Q14515 664 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 IZUMO4Q1ZYL8 232 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 LIN54Q6MZP7 749 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 MTFR2Q6P444 385 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 AAGABQ6PD74 315 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 SYNE3Q6ZMZ3 975 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 NKAPQ8N5F7 415 aaKnown RBP2.41□□□□□ -2.02
VPS13A-206ENST00000376646 NEXN-AS1Q8NBZ9 246 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 C2CD4CQ8TF44 421 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 SCLT1Q96NL6 688 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 SEZ6LQ9BYH1 1024 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 ACAD9Q9H845 621 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 RMI1Q9H9A7 625 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 Q9N2J8 555 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 LUZP4Q9P127 313 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 FZD10Q9ULW2 581 aa2.41□□□□□ -2.02
VPS13A-206ENST00000376646 GOLGA6L3A6NEY3 463 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 CSTBP04080 98 aaKnown RBP2.4□□□□□ -2.02
VPS13A-206ENST00000376646 HOXC6P09630 235 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 RASSF2P50749 326 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 CDK18Q07002 472 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 HYAL1Q12794 435 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 PKP1Q13835 747 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 DUSP6Q16828 381 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 ZACNQ401N2 412 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 GALNTL6Q49A17 601 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 ZNF628Q5EBL2 1059 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 GATAD2AQ86YP4 633 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 SCAMP5Q8TAC9 235 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 EVI5LQ96CN4 794 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 PHF21BQ96EK2 531 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 BRD8Q9H0E9 1235 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 TMEM248Q9NWD8 314 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 SELENONQ9NZV5 590 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 LRFN1Q9P244 771 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 ZNF112Q9UJU3 913 aa2.4□□□□□ -2.02
VPS13A-206ENST00000376646 LDB2O43679 373 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 ZBTB11O95625 1053 aaPredicted RBP2.4□□□□□ -2.03
VPS13A-206ENST00000376646 GRK6P43250 576 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 COMPP49747 757 aaPredicted RBP2.4□□□□□ -2.03
VPS13A-206ENST00000376646 CYP2J2P51589 502 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 PNLIPRP1P54315 467 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 PDCLQ13371 301 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 ZNF284Q2VY69 593 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 TMEM95Q3KNT9 176 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 FAM171A1Q5VUB5 890 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 LDHAL6AQ6ZMR3 332 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 FAM83HQ6ZRV2 1179 aaPredicted RBP2.4□□□□□ -2.03
VPS13A-206ENST00000376646 ARMC9Q7Z3E5 817 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 CPXCR1Q8N123 301 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 SPATA5Q8NB90 893 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 CEP76Q8TAP6 659 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 WFIKKN2Q8TEU8 576 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 TRIM31Q9BZY9 425 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 ACTR5Q9H9F9 607 aaPredicted RBP2.4□□□□□ -2.03
VPS13A-206ENST00000376646 PDE11AQ9HCR9 933 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 CD93Q9NPY3 652 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 GRHPRQ9UBQ7 328 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 CDH22Q9UJ99 828 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 SLC25A13Q9UJS0 675 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 PCDHGB1Q9Y5G3 927 aa2.4□□□□□ -2.03
VPS13A-206ENST00000376646 CLEC18AA5D8T8 446 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 GAGE12JA6NER3 117 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 DDTLA6NHG4 134 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-206ENST00000376646 NPIPB13A6NJU9 1138 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 NPIPB5A8MRT5 1133 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 NPIPB4C9JG80 1138 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 ACOT8O14734 319 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 NPHP1O15259 732 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 LARGE1O95461 756 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 PPP1R3DO95685 299 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 PAX3P23760 479 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 STAT1P42224 750 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 GRSF1Q12849 480 aaKnown RBP eCLIP2.39□□□□□ -2.03
VPS13A-206ENST00000376646 TRAF3Q13114 568 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 SYTL3Q4VX76 610 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 HSP90AB4PQ58FF6 505 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 DNTTIP2Q5QJE6 756 aaKnown RBP2.39□□□□□ -2.03
VPS13A-206ENST00000376646 OTUD1Q5VV17 481 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-206ENST00000376646 RRAGAQ7L523 313 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 CACNA2D3Q8IZS8 1091 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 DPP10Q8N608 796 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 MIGA1Q8NAN2 632 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 CLEC18CQ8NCF0 446 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 FAM71BQ8TC56 605 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 TMED6Q8WW62 240 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 PPM1EQ8WY54 764 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 RMDN3Q96TC7 470 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 CLPBQ9H078 707 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 CATSPERBQ9H7T0 1116 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 LIN7CQ9NUP9 197 aaKnown RBP2.39□□□□□ -2.03
VPS13A-206ENST00000376646 OCIAD1Q9NX40 245 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 ZDHHC7Q9NXF8 308 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 DACT1Q9NYF0 836 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 WNT16Q9UBV4 365 aa2.39□□□□□ -2.03
VPS13A-206ENST00000376646 MBD3L5A6NJ08 208 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-206ENST00000376646 ACKR2O00590 384 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms