RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 STOML2Q9UJZ1 356 aa14.05□□□□□ -0.16
PTPRF-202ENST00000372405 ACTL7BQ9Y614 415 aa14.05□□□□□ -0.16
PTPRF-202ENST00000372405 MIA3Q5JRA6 1907 aa14.05□□□□□ -0.16
PTPRF-202ENST00000372405 FAM159BA6NKW6 160 aa14.04□□□□□ -0.16
PTPRF-202ENST00000372405 GRXCR1A8MXD5 290 aa14.04□□□□□ -0.16
PTPRF-202ENST00000372405 UGT1A9O60656 530 aa14.04□□□□□ -0.16
PTPRF-202ENST00000372405 BRAFP15056 766 aa14.04□□□□□ -0.16
PTPRF-202ENST00000372405 IRS1P35568 1242 aa14.04□□□□□ -0.16
PTPRF-202ENST00000372405 MSH2P43246 934 aa14.04□□□□□ -0.16
PTPRF-202ENST00000372405 YBEYP58557 167 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-202ENST00000372405 SMAD3P84022 425 aaKnown RBP14.04□□□□□ -0.16
PTPRF-202ENST00000372405 PABPC1LQ4VXU2 614 aaKnown RBP14.04□□□□□ -0.16
PTPRF-202ENST00000372405 CERCAMQ5T4B2 595 aa14.04□□□□□ -0.16
PTPRF-202ENST00000372405 CASC4Q6P4E1 433 aa14.04□□□□□ -0.16
PTPRF-202ENST00000372405 LEKR1Q6ZMV7 388 aa14.04□□□□□ -0.16
PTPRF-202ENST00000372405 TEX26Q8N6G2 289 aa14.04□□□□□ -0.16
PTPRF-202ENST00000372405 PABPC5Q96DU9 382 aaKnown RBP14.04□□□□□ -0.16
PTPRF-202ENST00000372405 LRRC40Q9H9A6 602 aa14.04□□□□□ -0.16
PTPRF-202ENST00000372405 UGT1A7Q9HAW7 530 aa14.04□□□□□ -0.16
PTPRF-202ENST00000372405 UGT1A10Q9HAW8 530 aa14.04□□□□□ -0.16
PTPRF-202ENST00000372405 UGT1A8Q9HAW9 530 aa14.04□□□□□ -0.16
PTPRF-202ENST00000372405 NOTCH4Q99466 2003 aa14.04□□□□□ -0.16
PTPRF-202ENST00000372405 A6NNZ2 444 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 ALDH1A2O94788 518 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 GLUD1P00367 558 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 LRG1P02750 347 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 GJA1P17302 382 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 PGAM1P18669 254 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 HOXD9P28356 352 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-202ENST00000372405 CLCN4P51793 760 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 CDH4P55283 916 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 TNK2Q07912 1038 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 NR1H3Q13133 447 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 CRYMQ14894 314 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 ANO4Q32M45 955 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 TUBB8Q3ZCM7 444 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 STXBP5Q5T5C0 1151 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 DENND5AQ6IQ26 1287 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 CES3Q6UWW8 571 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 CCDC149Q6ZUS6 474 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 PGBD5Q8N414 524 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 FCRL3Q96P31 734 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-202ENST00000372405 EMILIN2Q9BXX0 1053 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 TRABDQ9H4I3 376 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 RABEP2Q9H5N1 569 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 SP110Q9HB58 689 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 PDFQ9HBH1 243 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 NT5MQ9NPB1 228 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 TLR9Q9NR96 1032 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 HCFC1R1Q9NWW0 138 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 CPQQ9Y646 472 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 HELZP42694 1942 aaKnown RBP14.03□□□□□ -0.16
PTPRF-202ENST00000372405 BPTFQ12830 3046 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 C5orf67F2Z3F1 127 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 GFRA2O00451 464 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 GRM6O15303 877 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 CCL16O15467 120 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 TSPAN3O60637 253 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 PRAMEF11O60813 436 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 TPH1P17752 444 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 KRT15P19012 456 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 HDCP19113 662 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 ADRA1AP35348 466 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 CCR2P41597 374 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 RENBPP51606 427 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 SEC24CP53992 1094 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 MAXP61244 160 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 IL10RBQ08334 325 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 NIPAL4Q0D2K0 466 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 PRPSAP1Q14558 356 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 RABGAP1LQ5R372 815 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 C9orf50Q5SZB4 431 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 MARC1Q5VT66 337 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 Q6ZNB5 142 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 CYS1Q717R9 158 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 LRRC6Q86X45 466 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 PPM1NQ8N819 430 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 MAB21L3Q8N8X9 362 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 DNAAF3Q8N9W5 541 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 OR7D4Q8NG98 312 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 CENPTQ96BT3 561 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 MRGPRX2Q96LB1 330 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 SLC17A6Q9P2U8 582 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 AAR2Q9Y312 384 aaKnown RBP14.03□□□□□ -0.16
PTPRF-202ENST00000372405 ACTL7AQ9Y615 435 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 PDE4DIPQ5VU43 2346 aa14.03□□□□□ -0.16
PTPRF-202ENST00000372405 ATG2AQ2TAZ0 1938 aa14.02□□□□□ -0.16
PTPRF-202ENST00000372405 TRANK1O15050 2925 aa14.02□□□□□ -0.16
PTPRF-202ENST00000372405 A0A1W2PRU2 124 aa14.02□□□□□ -0.16
PTPRF-202ENST00000372405 TTC24A2A3L6 582 aaPredicted RBP14.02□□□□□ -0.16
PTPRF-202ENST00000372405 MMP2P08253 660 aa14.02□□□□□ -0.16
PTPRF-202ENST00000372405 GNA12Q03113 381 aa14.02□□□□□ -0.16
PTPRF-202ENST00000372405 NAPEPLDQ6IQ20 393 aa14.02□□□□□ -0.16
PTPRF-202ENST00000372405 SLC26A11Q86WA9 606 aa14.02□□□□□ -0.16
PTPRF-202ENST00000372405 ZNF354CQ86Y25 554 aa14.02□□□□□ -0.16
PTPRF-202ENST00000372405 CTAGE3PQ8IX95 158 aa14.02□□□□□ -0.16
PTPRF-202ENST00000372405 C4orf33Q8N1A6 199 aa14.02□□□□□ -0.16
PTPRF-202ENST00000372405 IPMKQ8NFU5 416 aa14.02□□□□□ -0.16
PTPRF-202ENST00000372405 IMP4Q96G21 291 aaKnown RBP14.02□□□□□ -0.16
PTPRF-202ENST00000372405 TBL1YQ9BQ87 522 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms