RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 STILQ15468 1287 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 ALX1Q15699 326 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 RETSATQ6NUM9 610 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 WDR59Q6PJI9 974 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 SKA1Q96BD8 255 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 ART5Q96L15 291 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 DCUN1D5Q9BTE7 237 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 BCAS3Q9H6U6 928 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 GKN1Q9NS71 199 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 VAV1P15498 845 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 KCNA3P22001 575 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 CAV1Q03135 178 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 RCN1Q15293 331 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 ZNF542PQ5EBM4 170 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 ZNF470Q6ECI4 717 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 STK32CQ86UX6 486 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 FBXO39Q8N4B4 442 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 SLC22A8Q8TCC7 542 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 SETD7Q8WTS6 366 aaKnown RBP7.46□□□□□ -1.22
VPS13A-202ENST00000357409 DHRS1Q96LJ7 313 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 INTS7Q9NVH2 962 aaKnown RBP7.46□□□□□ -1.22
VPS13A-202ENST00000357409 UBA2Q9UBT2 640 aaPredicted RBP7.46□□□□□ -1.22
VPS13A-202ENST00000357409 CCDC154A6NI56 674 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 TBX18O95935 607 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 CNPP09543 421 aaKnown RBP7.46□□□□□ -1.22
VPS13A-202ENST00000357409 CCDC166P0CW27 439 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 FXR2P51116 673 aaKnown RBP eCLIP7.46□□□□□ -1.222e-6■■■□□ 17.6
VPS13A-202ENST00000357409 NOMO3P69849 1222 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 NOMO1Q15155 1222 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 HID1Q8IV36 788 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 KBTBD2Q8IY47 623 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 C12orf76Q8N812 135 aaPredicted RBP7.46□□□□□ -1.22
VPS13A-202ENST00000357409 SCAIQ8N9R8 606 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 GMCL1Q96IK5 515 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 SSH2Q76I76 1423 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 KCNJ5P48544 419 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 CCZ1BP86790 482 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 CCZ1P86791 482 aaPredicted RBP7.46□□□□□ -1.22
VPS13A-202ENST00000357409 C1orf61Q13536 156 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 CHADLQ6NUI6 762 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 TTC33Q6PID6 262 aaPredicted RBP7.46□□□□□ -1.22
VPS13A-202ENST00000357409 LRRN4CLQ8ND94 238 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 ATP8B4Q8TF62 1192 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 FAM105AQ9NUU6 356 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 CLIC5Q9NZA1 410 aa7.46□□□□□ -1.22
VPS13A-202ENST00000357409 AP5Z1O43299 807 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 NOS1APO75052 506 aaPredicted RBP7.45□□□□□ -1.22
VPS13A-202ENST00000357409 RBMXL2O75526 392 aaKnown RBP7.45□□□□□ -1.22
VPS13A-202ENST00000357409 CELF3Q5SZQ8 465 aaKnown RBP7.45□□□□□ -1.22
VPS13A-202ENST00000357409 TMPRSS11BQ86T26 416 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 ZNF611Q8N823 705 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 TCP10LQ8TDR4 215 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 COPS4Q9BT78 406 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 DDX18Q9NVP1 670 aaKnown RBP7.45□□□□□ -1.22
VPS13A-202ENST00000357409 UVRAGQ9P2Y5 699 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 DUSP12Q9UNI6 340 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 ZFP37Q9Y6Q3 630 aaPredicted RBP7.45□□□□□ -1.22
VPS13A-202ENST00000357409 CLCNKBP51801 687 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 TAF8Q7Z7C8 310 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 ACTL9Q8TC94 416 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 GAL3ST4Q96RP7 486 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 CNPY3Q9BT09 278 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 NCKIPSDQ9NZQ3 722 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 OR12D3Q9UGF7 316 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.45□□□□□ -1.22
VPS13A-202ENST00000357409 IGF2BP3O00425 579 aaKnown RBP eCLIP7.45□□□□□ -1.22
VPS13A-202ENST00000357409 XYLBO75191 536 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 INHAP05111 366 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 TMEM253P0C7T8 217 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 S100A5P33763 92 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 GPR15P49685 360 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 CEBPGP53567 150 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 HDAC4P56524 1084 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 LRRC8DQ7L1W4 858 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 ARHGAP9Q9BRR9 750 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 CDADC1Q9BWV3 514 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 B4DGG1 531 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 CDH16O75309 829 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 TOMM70O94826 608 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 APOA1P02647 267 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 KLHL24Q6TFL4 600 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 HDDC3Q8N4P3 179 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 USP38Q8NB14 1042 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 UBASH3BQ8TF42 649 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 COQ7Q99807 217 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 BRD7Q9NPI1 651 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 AVENQ9NQS1 362 aaPredicted RBP7.45□□□□□ -1.22
VPS13A-202ENST00000357409 BARX2Q9UMQ3 279 aaPredicted RBP7.45□□□□□ -1.22
VPS13A-202ENST00000357409 ZNF541Q9H0D2 1346 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 DCXO43602 365 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 COX7A2P14406 83 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 LSP1P33241 339 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 IRF8Q02556 426 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 PTSQ03393 145 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 NFATC2Q13469 925 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 LRRC8BQ6P9F7 803 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 PIGZQ86VD9 579 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 TNS4Q8IZW8 715 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 JOSD2Q8TAC2 188 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 KANSL3Q9P2N6 904 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 267 ms