RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CATSPEREQ5SY80 951 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 TEX35Q5T0J7 233 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 FAM72AQ5TYM5 149 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 C9orf57Q5W0N0 161 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 STEAP4Q687X5 459 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 FAM72DQ6L9T8 149 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 RGS9BPQ6ZS82 235 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 FAM183BPQ6ZVS7 135 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 H2AFVQ71UI9 128 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 FAM72BQ86X60 149 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 AHI1Q8N157 1196 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 EXD1Q8NHP7 514 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 FEZF2Q8TBJ5 459 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 BCL7CQ8WUZ0 217 aaPredicted RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 CPT1BQ92523 772 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CDK5RAP3Q96JB5 506 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 GDAP1L1Q96MZ0 367 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 TTC1Q99614 292 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 POFUT1Q9H488 388 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 NXF3Q9H4D5 531 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 AGO3Q9H9G7 860 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 EPB41L5Q9HCM4 733 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 PNPLA8Q9NP80 782 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 PCMTD2Q9NV79 361 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 TMOD2Q9NZR1 351 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CTNNAL1Q9UBT7 734 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 DNPEPQ9ULA0 475 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 EMCNQ9ULC0 261 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 DRG1Q9Y295 367 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 TTLL3Q9Y4R7 772 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CCDC188H7C350 402 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 EIF3HO15372 352 aaKnown RBP eCLIP2.41□□□□□ -2.02
VPS54-202ENST00000354504 CLDN3O15551 220 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 STRNO43815 780 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 HBP1O60381 514 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 EXOC3O60645 756 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 PPFIA4O75335 1185 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 TBCAO75347 108 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 ALDH1A2O94788 518 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 GH1P01241 217 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 IGLV3-27P01718 113 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 FUCA1P04066 466 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ZSCAN5DPP0CG00 497 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ALADP13716 330 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 WARSP23381 471 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 KCNJ1P48048 391 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 NEK3P51956 506 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 SLC18A1P54219 525 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 GPR85P60893 370 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 NIPAL4Q0D2K0 466 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 FAPQ12884 760 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CRHR2Q13324 411 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 PDCLQ13371 301 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 TUSC3Q13454 348 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 SNAPC2Q13487 334 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 DHX34Q14147 1143 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 LRRC32Q14392 662 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 MXD4Q14582 209 aaPredicted RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 SNX17Q15036 470 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CCNG2Q16589 344 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ARHGAP44Q17R89 818 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ATF7IP2Q5U623 682 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ALS2CLQ60I27 953 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 NCBP2-AS2Q69YL0 99 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 PM20D1Q6GTS8 502 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ARHGAP36Q6ZRI8 547 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CTU1Q7Z7A3 348 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 UBE2Q1Q7Z7E8 422 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 ZNF410Q86VK4 478 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 MFSD6LQ8IWD5 586 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 UNC45BQ8IWX7 931 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 FUKQ8N0W3 1084 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 PPM1KQ8N3J5 372 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CCDC47Q96A33 483 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 FUBP1Q96AE4 644 aaKnown RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 FAM204AQ9H8W3 233 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 KIAA1586Q9HCI6 787 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 NMRK2Q9NPI5 230 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 MED4Q9NPJ6 270 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 NINJ2Q9NZG7 142 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 SAE1Q9UBE0 346 aaPredicted RBP2.41□□□□□ -2.02
VPS54-202ENST00000354504 GGA2Q9UJY4 613 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 FBXW11Q9UKB1 542 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 SLC12A4Q9UP95 1085 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 SPEF1Q9Y4P9 236 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 TRBV23OR9-2A0A075B6M9 112 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 FADS2P1A8MWK0 482 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 VSTM5A8MXK1 200 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 TARM1B6A8C7 271 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 AKR1B10O60218 316 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 RASSF9O75901 435 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 MMP2P08253 660 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 ABHD2P08910 425 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 TPM1P09493 284 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 HSPA6P17066 643 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 KDELR1P24390 212 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 RABGGTBP53611 331 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 ZXDBP98169 803 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 SCAPQ12770 1279 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 IKQ13123 557 aaPredicted RBP2.4□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms