RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ADI1Q9BV57 179 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 TBC1D13Q9NVG8 400 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 ZNF112Q9UJU3 913 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 RAB23Q9ULC3 237 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 A0A087X0T9 212 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 RBM47A0AV96 593 aaKnown RBP12.77□□□□□ -0.37
COL6A3-203ENST00000353578 PGRP06401 933 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 E2F2Q14209 437 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 PAGE2Q7Z2X7 111 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 GPRC5DQ9NZD1 345 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 TRHDEQ9UKU6 1024 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 ZNF804BA4D1E1 1349 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 I3L521 148 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 FBP2O00757 339 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 RGS14O43566 566 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 HNRNPFP52597 415 aaKnown RBP12.77□□□□□ -0.37
COL6A3-203ENST00000353578 POF1BQ8WVV4 589 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 UGT1A9O60656 530 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 UGT1A6P19224 532 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 UGT1A1P22309 533 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 UGT1A4P22310 534 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 UGT1A3P35503 534 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 UGT1A5P35504 534 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 OR5J2Q8NH18 312 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 UGT1A7Q9HAW7 530 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 UGT1A10Q9HAW8 530 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 UGT1A8Q9HAW9 530 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 NDUFB9Q9Y6M9 179 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 CDC25AP30304 524 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 PTSQ03393 145 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 NCOA4Q13772 614 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 BRMS1LQ5PSV4 323 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 C6orf183Q5T699 404 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 ELMOD2Q8IZ81 293 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 B8ZZF3 427 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 RPLP0P05388 317 aaKnown RBP12.76□□□□□ -0.37
COL6A3-203ENST00000353578 GRIK3Q13003 919 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 KCTD2Q14681 263 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 TBC1D15Q8TC07 691 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 NCANO14594 1321 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 SLC30A4O14863 429 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 PROSCO94903 275 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 CDH17Q12864 832 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 HAGHLQ6PII5 290 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-203ENST00000353578 CYP4V2Q6ZWL3 525 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-203ENST00000353578 BPIFB6Q8NFQ5 453 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 UNKLQ9H9P5 680 aaKnown RBP12.76□□□□□ -0.37
COL6A3-203ENST00000353578 RAP2CQ9Y3L5 183 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 ERVV-1B6SEH8 477 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 COLGALT2Q8IYK4 626 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 IQCKQ8N0W5 287 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 STK40Q8N2I9 435 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 TCEAL4Q96EI5 215 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 PDGFCQ9NRA1 345 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 TLL2Q9Y6L7 1015 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 CRTAPO75718 401 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-203ENST00000353578 VAPBO95292 243 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 CHERPQ8IWX8 916 aaKnown RBP12.76□□□□□ -0.37
COL6A3-203ENST00000353578 IQCF2Q8IXL9 164 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 UBE2E3Q969T4 207 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 KAT8Q9H7Z6 458 aaKnown RBP12.76□□□□□ -0.37
COL6A3-203ENST00000353578 STK32BQ9NY57 414 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 DHRS7Q9Y394 339 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 IL18Q14116 193 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 DIRAS2Q96HU8 199 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 AIFM3Q96NN9 605 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 SIK2Q9H0K1 926 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 UBQLN2Q9UHD9 624 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 INVSQ9Y283 1065 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 TRAF6Q9Y4K3 522 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 LRRC10BA6NIK2 292 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 H0YJX3 145 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 WRBO00258 174 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 EDF1O60869 148 aaKnown RBP12.76□□□□□ -0.37
COL6A3-203ENST00000353578 ACCSLQ4AC99 568 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 NECAB2Q7Z6G3 386 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 AIF1LQ9BQI0 150 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 NDUFAF4Q9P032 175 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 SPASTQ9UBP0 616 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 GRIP1Q9Y3R0 1128 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 SETD1AO15047 1707 aaKnown RBP12.76□□□□□ -0.37
COL6A3-203ENST00000353578 NRXN1Q9ULB1 1477 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 E7ENX8 843 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 BCKDKO14874 412 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 DBTP11182 482 aaKnown RBP12.76□□□□□ -0.37
COL6A3-203ENST00000353578 PON1P27169 355 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 TMBIM6P55061 237 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 AUHQ13825 339 aaKnown RBP12.76□□□□□ -0.37
COL6A3-203ENST00000353578 TRAPPC3LQ5T215 181 aa12.76□□□□□ -0.37
COL6A3-203ENST00000353578 DDX43Q9NXZ2 648 aaKnown RBP12.76□□□□□ -0.37
COL6A3-203ENST00000353578 SUCOQ9UBS9 1254 aaKnown RBP12.76□□□□□ -0.37
COL6A3-203ENST00000353578 MROH2AA6NES4 1674 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 AP3D1O14617 1153 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 NPY2RP49146 381 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 TCEAL5Q5H9L2 206 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 CHSY1Q86X52 802 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 HGH1Q9BTY7 390 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 CDH22Q9UJ99 828 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 KANTRA0A1W2PQU2 76 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 SLC6A4P31645 630 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms