RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SLC44A3Q8N4M1 653 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 ZNF419Q96HQ0 510 aaPredicted RBP9.4□□□□□ -0.91
USP4-202ENST00000351842 NECTIN4Q96NY8 510 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 RBM15Q96T37 977 aaKnown RBP eCLIP9.4□□□□□ -0.91
USP4-202ENST00000351842 LCMT1Q9UIC8 334 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 VPS51Q9UID3 782 aa9.4□□□□□ -0.91
USP4-202ENST00000351842 INTS6Q9UL03 887 aaKnown RBP9.4□□□□□ -0.91
USP4-202ENST00000351842 ARHGAP42A6NI28 874 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 PRRT4C9JH25 899 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 SLC9A3R1O14745 358 aaPredicted RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 FGF10O15520 208 aaPredicted RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 AVILO75366 819 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 PABPC1P11940 636 aaKnown RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 GRIA1P42261 906 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 DSC2Q02487 901 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 SLC20A2Q08357 652 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 PPP2R5EQ16537 467 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 FNDC3BQ53EP0 1204 aaKnown RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 TMEM31Q5JXX7 168 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 SLC9A4Q6AI14 798 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 SERPINA13PQ6UXR4 307 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 MICALCLQ6ZW33 695 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 FAF2Q96CS3 445 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 THEGQ9P2T0 379 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 RSPH14Q9UHP6 348 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 NFU1Q9UMS0 254 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 NEU3Q9UQ49 428 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 PCDHGC4Q9Y5F7 938 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 PLK4O00444 970 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 NFKB1P19838 968 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 TNNT3P45378 269 aaPredicted RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 PXNP49023 591 aaPredicted RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 COPS2P61201 443 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 RHOAP61586 193 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 NNTQ13423 1086 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 FUT11Q495W5 492 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 MARC1Q5VT66 337 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 RASGEF1CQ8N431 466 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 PDCD7Q8N8D1 485 aaKnown RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 CCDC26Q8TAB7 109 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 C1orf74Q96LT6 269 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 XPO6Q96QU8 1125 aaKnown RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 TRIM56Q9BRZ2 755 aaKnown RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 BRD8Q9H0E9 1235 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 MUTYHQ9UIF7 546 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 GGA2Q9UJY4 613 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 PLA2G4CQ9UP65 541 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 UTP11Q9Y3A2 253 aaKnown RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 BPTFQ12830 3046 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 METTL18O95568 372 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 F7P08709 466 aaPredicted RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 ZFXP17010 805 aaPredicted RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 POLR2EP19388 210 aaKnown RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 CHRNA4P43681 627 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 RGRP47804 291 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 CARSP49589 748 aaKnown RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 SESN2P58004 480 aaPredicted RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 DHX9Q08211 1270 aaKnown RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 USP4Q13107 963 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 NR1H3Q13133 447 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 HTR4Q13639 388 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 PLEKHG6Q3KR16 790 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 ITPRIPL2Q3MIP1 535 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 SLC45A4Q5BKX6 768 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 DGKKQ5KSL6 1271 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 TMEM215Q68D42 235 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 MBLAC2Q68D91 279 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 ZNF771Q7L3S4 317 aaPredicted RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 NLRP14Q86W24 1093 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 ZNF567Q8N184 647 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 DNAAF3Q8N9W5 541 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 ATL2Q8NHH9 583 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 CALR3Q96L12 384 aaKnown RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 PNKPQ96T60 521 aa9.39□□□□□ -0.91
USP4-202ENST00000351842 CINPQ9BW66 212 aaPredicted RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 EVLQ9UI08 416 aaPredicted RBP9.39□□□□□ -0.91
USP4-202ENST00000351842 COL4A3Q01955 1670 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 OBSL1O75147 1896 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 TCRBV7S3A2A0A539 114 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 TTC34A8MYJ7 566 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 PRLRP16471 622 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 MX2P20592 715 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 TGM2P21980 687 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 CD86P42081 329 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 CCNG2Q16589 344 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 CCDC38Q502W7 563 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 PITRM1Q5JRX3 1037 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 MANEALQ5VSG8 457 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 TPRG1Q6ZUI0 275 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 CCDC13Q8IYE1 715 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 CPA6Q8N4T0 437 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 TTC13Q8NBP0 860 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 GANCQ8TET4 914 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 ARHGEF2Q92974 986 aaKnown RBP9.38□□□□□ -0.91
USP4-202ENST00000351842 SEMA3CQ99985 751 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 FAM83CQ9BQN1 747 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 FOXQ1Q9C009 403 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 SLC6A17Q9H1V8 727 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 ZDHHC6Q9H6R6 413 aa9.38□□□□□ -0.91
USP4-202ENST00000351842 TMEM248Q9NWD8 314 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms