RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 ZNF852Q6ZMS4 543 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 RDH11Q8TC12 318 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 MYLPFQ96A32 169 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 PTCD3Q96EY7 689 aaKnown RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 HEXIM2Q96MH2 286 aaKnown RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 FAM167BQ9BTA0 163 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 SPON2Q9BUD6 331 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 ILKAPQ9H0C8 392 aaPredicted RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 INTS7Q9NVH2 962 aaKnown RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 PTBP2Q9UKA9 531 aaKnown RBP3.34□□□□□ -1.88
CSMD3-202ENST00000339701 SLC39A10Q9ULF5 831 aa3.34□□□□□ -1.88
CSMD3-202ENST00000339701 KLHL33A6NCF5 533 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 LRRC53A6NM62 1247 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 NMT2O60551 498 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 TP53P04637 393 aaPredicted RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 ARP10275 920 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 ELNP15502 786 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 TNNI3P19429 210 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PPP3CCP48454 512 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SP2Q02086 613 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PAOXQ6QHF9 649 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 ABRAXAS1Q6UWZ7 409 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SGMS1Q86VZ5 419 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 ARL14Q8N4G2 192 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 FANCBQ8NB91 859 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 CLCC1Q96S66 551 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 BCL7BQ9BQE9 202 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SLC13A1Q9BZW2 595 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 XPO4Q9C0E2 1151 aaKnown RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 ASCC2Q9H1I8 757 aaPredicted RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 NDST4Q9H3R1 872 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 CATSPERBQ9H7T0 1116 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 TLR8Q9NR97 1041 aaKnown RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 NRCAMQ92823 1304 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 TRIM64BA6NI03 449 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 E5RI56 91 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SGK1O00141 431 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 WNT10BO00744 389 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 TRAFD1O14545 582 aaPredicted RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 GCATO75600 419 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 CLPTM1O96005 669 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SLC4A1P02730 911 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 CDK8P49336 464 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PRAMEP78395 509 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 BNIP2Q12982 314 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SIM2Q14190 667 aaPredicted RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 ZBTB6Q15916 424 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 DPY19L1Q2PZI1 675 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 CTXN3Q4LDR2 81 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SLC25A25Q6KCM7 469 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SCIMPQ6UWF3 145 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 RINLQ6ZS11 566 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PRICKLE2Q7Z3G6 844 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PLCZ1Q86YW0 608 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 ZNF321PQ8N8H1 164 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 EXD1Q8NHP7 514 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 FOXJ1Q92949 421 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 NPAS2Q99743 824 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 YTHDF1Q9BYJ9 559 aaKnown RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SYT4Q9H2B2 425 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 FBXO44Q9H4M3 255 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 GPN1Q9HCN4 374 aaPredicted RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 COPZ2Q9P299 210 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 FETUBQ9UGM5 382 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 TRPS1Q9UHF7 1281 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PADI2Q9Y2J8 665 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PARP14Q460N5 1801 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 ANK1P16157 1881 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 ARPC4-TTLL3A0A0A6YYG9 625 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SIN3BO75182 1162 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SCGNO76038 276 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 BAG2O95816 211 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 C7P10643 843 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 MYL12AP19105 171 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 RBM34P42696 430 aaKnown RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 CBX5P45973 191 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 RENBPP51606 427 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 NR1H2P55055 460 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 VBP1P61758 197 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 YWHAHQ04917 246 aaPredicted RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SPIRE1Q08AE8 756 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 VGLL4Q14135 290 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SF3B4Q15427 424 aaKnown RBP eCLIP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SEC23AQ15436 765 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 ARMC4Q5T2S8 1044 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 TRIQKQ629K1 86 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PLEKHA7Q6IQ23 1121 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SLC36A4Q6YBV0 504 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 GAS2L3Q86XJ1 694 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 CHPFQ8IZ52 775 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 C9orf72Q96LT7 481 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 MAGEB18Q96M61 343 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 EVA1AQ9H8M9 152 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 WHRNQ9P202 907 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 CD207Q9UJ71 328 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 RPS6KA6Q9UK32 745 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 MKLN1Q9UL63 735 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 TRIP12Q14669 1992 aaPredicted RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 EXTL3O43909 919 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 MTA2O94776 668 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms