RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 HNRNPA1P09651 372 aaKnown RBP eCLIP15.76■□□□□ 0.11
LIMS1-202ENST00000338045 ACVRL1P37023 503 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 CCR2P41597 374 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 GNA12Q03113 381 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 SPARCL1Q14515 664 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 TERF2Q15554 542 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 STEAP4Q687X5 459 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 SETD3Q86TU7 594 aaPredicted RBP15.76■□□□□ 0.11
LIMS1-202ENST00000338045 CCNJLQ8IV13 435 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 ARFGAP2Q8N6H7 521 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 OR52K2Q8NGK3 314 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 PDFQ9HBH1 243 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 PSD3Q9NYI0 1048 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 TTLL3Q9Y4R7 772 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 CHD9Q3L8U1 2897 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 ILVBLA1L0T0 632 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 TRDMT1O14717 391 aaKnown RBP15.76■□□□□ 0.11
LIMS1-202ENST00000338045 CKMP06732 381 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 POU2F2P09086 479 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 MYL4P12829 197 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 EPCAMP16422 314 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 HOXD9P28356 352 aaPredicted RBP15.76■□□□□ 0.11
LIMS1-202ENST00000338045 ATP5DP30049 168 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 STX2P32856 288 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 GEMIN4P57678 1058 aaKnown RBP15.76■□□□□ 0.11
LIMS1-202ENST00000338045 SLC10A7Q0GE19 358 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 MARC1Q5VT66 337 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 UNC5AQ6ZN44 842 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 HTR3DQ70Z44 454 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 CYS1Q717R9 158 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 SHKBP1Q8TBC3 707 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 STAMBPL1Q96FJ0 436 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 CYTH2Q99418 400 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 NAT9Q9BTE0 207 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 SLC46A2Q9BY10 475 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 HCFC1R1Q9NWW0 138 aa15.76■□□□□ 0.11
LIMS1-202ENST00000338045 YBX2Q9Y2T7 364 aaKnown RBP15.76■□□□□ 0.11
LIMS1-202ENST00000338045 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.75■□□□□ 0.11
LIMS1-202ENST00000338045 A0A0D9SEW6 157 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 AP3B1O00203 1094 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 MOSPD3O75425 235 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 GJA1P17302 382 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 PTPN2P17706 415 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 PRKCHP24723 683 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 DDX6P26196 483 aaKnown RBP eCLIP15.75■□□□□ 0.11
LIMS1-202ENST00000338045 MGAT1P26572 445 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 HPDP32754 393 aaPredicted RBP15.75■□□□□ 0.11
LIMS1-202ENST00000338045 SESN2P58004 480 aaPredicted RBP15.75■□□□□ 0.11
LIMS1-202ENST00000338045 PPP2R2AP63151 447 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 ZNF177Q13360 481 aaPredicted RBP15.75■□□□□ 0.11
LIMS1-202ENST00000338045 GPM6BQ13491 265 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 OLIG2Q13516 323 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 STXBP5Q5T5C0 1151 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 NAPEPLDQ6IQ20 393 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 EXOC3L1Q86VI1 746 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 CYP4X1Q8N118 509 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 LEMD2Q8NC56 503 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 OR52K1Q8NGK4 314 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 SPATA22Q8NHS9 363 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 NSMCE1Q8WV22 266 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 CFAP36Q96G28 342 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 ZNF599Q96NL3 588 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 SLC25A51Q9H1U9 297 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 DNMT3BQ9UBC3 853 aaKnown RBP15.75■□□□□ 0.11
LIMS1-202ENST00000338045 ARHGAP26Q9UNA1 814 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 MAD1L1Q9Y6D9 718 aa15.75■□□□□ 0.11
LIMS1-202ENST00000338045 SOBPA7XYQ1 873 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 POC1B-GALNT4F8VUJ3 575 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 USP12O75317 370 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 GEMP55040 296 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 EFTUD2Q15029 972 aaKnown RBP eCLIP15.74■□□□□ 0.11
LIMS1-202ENST00000338045 SKIDA1Q1XH10 827 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 CXorf57Q6NSI4 855 aaKnown RBP15.74■□□□□ 0.11
LIMS1-202ENST00000338045 ADGRD1Q6QNK2 874 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 LINC00523Q86TU6 105 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 CPXM2Q8N436 756 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 GSDMBQ8TAX9 411 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 PABPC5Q96DU9 382 aaKnown RBP15.74■□□□□ 0.11
LIMS1-202ENST00000338045 ACE2Q9BYF1 805 aaPredicted RBP15.74■□□□□ 0.11
LIMS1-202ENST00000338045 ZDHHC7Q9NXF8 308 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 PSMC3IPQ9P2W1 217 aaPredicted RBP15.74■□□□□ 0.11
LIMS1-202ENST00000338045 LSM7Q9UK45 103 aaKnown RBP15.74■□□□□ 0.11
LIMS1-202ENST00000338045 ZNF510Q9Y2H8 683 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 MYO7AQ13402 2215 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 TSPAN3O60637 253 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 NEBLO76041 1014 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 MT-CYBP00156 380 aaPredicted RBP15.74■□□□□ 0.11
LIMS1-202ENST00000338045 RHOP08100 348 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 ADRA1AP35348 466 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 KBTBD12Q3ZCT8 623 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 TMCO4Q5TGY1 634 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 ZNF783Q6ZMS7 281 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 PRPF39Q86UA1 669 aaKnown RBP15.74■□□□□ 0.11
LIMS1-202ENST00000338045 ZNF354CQ86Y25 554 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 HJURPQ8NCD3 748 aaPredicted RBP15.74■□□□□ 0.11
LIMS1-202ENST00000338045 OR7D4Q8NG98 312 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 TADA1Q96BN2 335 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 IMP4Q96G21 291 aaKnown RBP15.74■□□□□ 0.11
LIMS1-202ENST00000338045 PAFAH2Q99487 392 aa15.74■□□□□ 0.11
LIMS1-202ENST00000338045 PIH1D1Q9NWS0 290 aaKnown RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms