RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 CNOT9Q92600 299 aaKnown RBP3.63□□□□□ -1.83
HMGB1-201ENST00000326004 COQ8BQ96D53 544 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 ZFYVE19Q96K21 471 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 WDR83Q9BRX9 315 aaKnown RBP3.63□□□□□ -1.83
HMGB1-201ENST00000326004 INTS2Q9H0H0 1204 aaKnown RBP3.63□□□□□ -1.83
HMGB1-201ENST00000326004 HIPK3Q9H422 1215 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 SPAG4Q9NPE6 437 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 THSD1Q9NS62 852 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 TMEM184CQ9NVA4 438 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 BEX4Q9NWD9 120 aaPredicted RBP3.63□□□□□ -1.83
HMGB1-201ENST00000326004 PPP1R14DQ9NXH3 145 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 GRHL1Q9NZI5 618 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 ICKQ9UPZ9 632 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 BTBD3Q9Y2F9 522 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 CLDN16Q9Y5I7 305 aa3.63□□□□□ -1.83
HMGB1-201ENST00000326004 TRBV5-7A0A0A0MS05 114 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 J3KRW8 73 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 TSPAN4O14817 238 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 EPB41L2O43491 1005 aaKnown RBP3.62□□□□□ -1.83
HMGB1-201ENST00000326004 FGBP02675 491 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 KLRC2P26717 231 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 HOXD9P28356 352 aaPredicted RBP3.62□□□□□ -1.83
HMGB1-201ENST00000326004 ELF1P32519 619 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 SLC16A2P36021 539 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 TUBP50607 506 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 RPP30P78346 268 aaKnown RBP3.62□□□□□ -1.83
HMGB1-201ENST00000326004 MRPS21P82921 87 aaKnown RBP3.62□□□□□ -1.83
HMGB1-201ENST00000326004 SRSF1Q07955 248 aaKnown RBP eCLIP3.62□□□□□ -1.83
HMGB1-201ENST00000326004 GALNT2Q10471 571 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 G3BP1Q13283 466 aaKnown RBP eCLIP3.62□□□□□ -1.83
HMGB1-201ENST00000326004 CAMK1Q14012 370 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 RPE65Q16518 533 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 SLC18A3Q16572 532 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 CCDC142Q17RM4 750 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 Q4G0T1 1027 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 COLEC12Q5KU26 742 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 C6orf10Q5SRN2 563 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 TTLL5Q6EMB2 1281 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 WDR5BQ86VZ2 330 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 CCDC25Q86WR0 208 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 HEATR4Q86WZ0 1026 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 GHDCQ8N2G8 530 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 TCP11L2Q8N4U5 519 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 SLC25A41Q8N5S1 370 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 DPP10Q8N608 796 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 C16orf52Q8NHV5 167 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 CENPIQ92674 756 aaPredicted RBP3.62□□□□□ -1.83
HMGB1-201ENST00000326004 APOPT1Q96IL0 206 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 MPP4Q96JB8 637 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 TRMOQ9BU70 441 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.62□□□□□ -1.83
HMGB1-201ENST00000326004 SLC26A6Q9BXS9 759 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 UBA5Q9GZZ9 404 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 TASP1Q9H6P5 420 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 ZNF304Q9HCX3 659 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 ENTPD7Q9NQZ7 604 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 ZDHHC7Q9NXF8 308 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 TUBA8Q9NY65 449 aaPredicted RBP3.62□□□□□ -1.83
HMGB1-201ENST00000326004 HCN3Q9P1Z3 774 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 HDAC6Q9UBN7 1215 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 CNPY2Q9Y2B0 182 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 CYP46A1Q9Y6A2 500 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 SLC4A4Q9Y6R1 1079 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 TTBK1Q5TCY1 1321 aaPredicted RBP3.62□□□□□ -1.83
HMGB1-201ENST00000326004 PCSK5Q92824 1860 aa3.62□□□□□ -1.83
HMGB1-201ENST00000326004 A0A0G2JK05 382 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 C17orf113A0A1B0GUU1 675 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 C17orf102A2RUQ5 167 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 TEX22C9J3V5 150 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 ADAM10O14672 748 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 PER2O15055 1255 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 RNMTO43148 476 aaKnown RBP3.61□□□□□ -1.83
HMGB1-201ENST00000326004 SH3BP5O60239 455 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 TMCC1O94876 653 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 CBX6O95503 412 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 SERPINC1P01008 464 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 YWHAQP27348 245 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 KRT9P35527 623 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 ARL1P40616 181 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-201ENST00000326004 CLCNKBP51801 687 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 CDH15P55291 814 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 DDX10Q13206 875 aaKnown RBP3.61□□□□□ -1.83
HMGB1-201ENST00000326004 MTX1Q13505 466 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 SMTNL2Q2TAL5 461 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 ZNF766Q5HY98 468 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 ENTPD8Q5MY95 495 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 PIK3CD-AS1Q5SR53 167 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 SLC9C2Q5TAH2 1124 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 NAPEPLDQ6IQ20 393 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 MRPL10Q7Z7H8 261 aaKnown RBP3.61□□□□□ -1.83
HMGB1-201ENST00000326004 TMC8Q8IU68 726 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 ARMC8Q8IUR7 673 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.61□□□□□ -1.83
HMGB1-201ENST00000326004 ZDHHC23Q8IYP9 409 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 PCYOX1LQ8NBM8 494 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 DENND1AQ8TEH3 1009 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 TBC1D22AQ8WUA7 517 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 RUFY2Q8WXA3 655 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 HSPH1Q92598 858 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 RPL36ALQ969Q0 106 aaKnown RBP3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms