RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TCOF1Q13428 1488 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 A0A0G2JMP0 313 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 PLD2O14939 933 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 CRXO43186 299 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 CYP17A1P05093 508 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 MAT2AP31153 395 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 RFC2P35250 354 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 IDH3GP51553 393 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 DPYSQ14117 519 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 HKDC1Q2TB90 917 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 MCMDC2Q4G0Z9 681 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 DENND5BQ6ZUT9 1274 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 OR4M2Q8NGB6 313 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 SPPL2AQ8TCT8 520 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 CENPNQ96H22 339 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 HEXIM2Q96MH2 286 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 ZSWIM3Q96MP5 696 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 BDH2Q9BUT1 245 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 SEMA6AQ9H2E6 1030 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 SLAIN2Q9P270 581 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 MYRFQ9Y2G1 1151 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 MTF2Q9Y483 593 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 EPN1Q9Y6I3 576 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 GNAT3A8MTJ3 354 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 MBD4O95243 580 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 MTHFD1P11586 935 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 DLSTP36957 453 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 NDUFA6P56556 154 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 GTF2H2Q13888 395 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 SLC15A2Q16348 729 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 CALCRLQ16602 461 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 GTF2H2CQ6P1K8 395 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 SSX9Q7RTT3 188 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 SLC25A41Q8N5S1 370 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 OR4D6Q8NGJ1 314 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 FNIP1Q8TF40 1166 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 PTCD2Q8WV60 388 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 CHTF18Q8WVB6 975 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 SLC25A36Q96CQ1 311 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 PNMA5Q96PV4 448 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 KCTD14Q9BQ13 255 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 NUDT16L1Q9BRJ7 211 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 IDI2Q9BXS1 227 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 SP110Q9HB58 689 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 CDH20Q9HBT6 801 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 PICK1Q9NRD5 415 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 ACTR10Q9NZ32 417 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 PSMC3IPQ9P2W1 217 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 ADAM29Q9UKF5 820 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 VPS9D1Q9Y2B5 631 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 TMED5Q9Y3A6 229 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 TPRKBQ9Y3C4 175 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 GAPVD1Q14C86 1478 aa7.74□□□□□ -1.17
LIMCH1-201ENST00000313860 PPEF1O14829 653 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 RTN2O75298 545 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 NR3C2P08235 984 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 DPP6P42658 865 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 TSPAN5P62079 268 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 CLEC12AQ5QGZ9 265 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 MBD3L1Q8WWY6 194 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 GRAMD1AQ96CP6 724 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 AGAP3Q96P47 875 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 PSKH2Q96QS6 385 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 PLGRKTQ9HBL7 147 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 PTPRHQ9HD43 1115 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 DNAAF2Q9NVR5 837 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 JAG2Q9Y219 1238 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 WDR45Q9Y484 360 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 RNF212BA8MTL3 300 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 SMIM22K7EJ46 135 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 GMDSO60547 372 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 TSPAN15O95858 294 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 FTLP02792 175 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 FGFR4P22455 802 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 PRKACBP22694 351 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 PTPN7P35236 360 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 HTR2BP41595 481 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 GNA12Q03113 381 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 TCEAL6Q6IPX3 200 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 WASH2PQ6VEQ5 465 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 RHOUQ7L0Q8 258 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 ZNF438Q7Z4V0 828 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 RCOR2Q8IZ40 523 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 CPSF7Q8N684 471 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 BARD1Q99728 777 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 CLPBQ9H078 707 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 WDR26Q9H7D7 661 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 PRKAG3Q9UGI9 489 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 UNC13AQ9UPW8 1703 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 NNMTP40261 264 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 PIN1Q13526 163 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 COX15Q7KZN9 410 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 VSTM4Q8IW00 320 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 COLGALT1Q8NBJ5 622 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 PAPD5Q8NDF8 572 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 PI4K2BQ8TCG2 481 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 MASTLQ96GX5 879 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 UQCC2Q9BRT2 126 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 NXF1Q9UBU9 619 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 HEATR9A2RTY3 570 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms